BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0744400 Os01g0744400|AK067648
         (709 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0744400  Conserved hypothetical protein                     1164   0.0  

>Os01g0744400 Conserved hypothetical protein
          Length = 709

 Score = 1164 bits (3011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 602/709 (84%), Positives = 602/709 (84%)

Query: 1   MASWLKVAEDLLEVVDRRAKIVATELSDXXXXXXXXXXXXXXXXAKKGKLREKGPLKLAT 60
           MASWLKVAEDLLEVVDRRAKIVATELSD                AKKGKLREKGPLKLAT
Sbjct: 1   MASWLKVAEDLLEVVDRRAKIVATELSDEQSSPQPSGSSSQEGQAKKGKLREKGPLKLAT 60

Query: 61  GDAGSRTAAQKERKSRQPPRERIKIEKIRXXXXXXXXXXXXXXXXXXXXXXXXXGLDDDG 120
           GDAGSRTAAQKERKSRQPPRERIKIEKIR                         GLDDDG
Sbjct: 61  GDAGSRTAAQKERKSRQPPRERIKIEKIRPSPPVDSSSVDASASKPDVSSSDVKGLDDDG 120

Query: 121 GAEKEEKVVVDRKNDIGAEVVDTEVEVQSTERSAEDAAIVVXXXXXXXXXXXXXXXXXXX 180
           GAEKEEKVVVDRKNDIGAEVVDTEVEVQSTERSAEDAAIVV                   
Sbjct: 121 GAEKEEKVVVDRKNDIGAEVVDTEVEVQSTERSAEDAAIVVDGAADSGNSEGAAESSAPS 180

Query: 181 VPDERCEPSISNQDAEIVSAVNLEEKDSAMEVIHEKNIKEVPDTQVSGKSQDSKREGLSD 240
           VPDERCEPSISNQDAEIVSAVNLEEKDSAMEVIHEKNIKEVPDTQVSGKSQDSKREGLSD
Sbjct: 181 VPDERCEPSISNQDAEIVSAVNLEEKDSAMEVIHEKNIKEVPDTQVSGKSQDSKREGLSD 240

Query: 241 SPESTENQQEHKLDSGSVKDQDQLEEARGLLKNVVKTGQSKEARLARVCAGLSSRLQEYK 300
           SPESTENQQEHKLDSGSVKDQDQLEEARGLLKNVVKTGQSKEARLARVCAGLSSRLQEYK
Sbjct: 241 SPESTENQQEHKLDSGSVKDQDQLEEARGLLKNVVKTGQSKEARLARVCAGLSSRLQEYK 300

Query: 301 SENAQLEELLVQEREKCSSYEAHMKQLQQELSMSRVEGSRAESNMVDALTAKNAEIESLV 360
           SENAQLEELLVQEREKCSSYEAHMKQLQQELSMSRVEGSRAESNMVDALTAKNAEIESLV
Sbjct: 301 SENAQLEELLVQEREKCSSYEAHMKQLQQELSMSRVEGSRAESNMVDALTAKNAEIESLV 360

Query: 361 KSLDSWXXXXXXXXXXXXXXQEDMDGLKRNRELTETRVIQALREELATVERRAEEERIAH 420
           KSLDSW              QEDMDGLKRNRELTETRVIQALREELATVERRAEEERIAH
Sbjct: 361 KSLDSWKKKAAASEEKLAALQEDMDGLKRNRELTETRVIQALREELATVERRAEEERIAH 420

Query: 421 NATKMAAVEREVELEHRAVEASNALARIQRAADQSSSRAMELEHKVAVLEVECASLQQEL 480
           NATKMAAVEREVELEHRAVEASNALARIQRAADQSSSRAMELEHKVAVLEVECASLQQEL
Sbjct: 421 NATKMAAVEREVELEHRAVEASNALARIQRAADQSSSRAMELEHKVAVLEVECASLQQEL 480

Query: 481 QEMEARNRRAQKKPSEEANQVIQMQAWQEEVERARQSQREAETKISSLEAELQKMRVEMA 540
           QEMEARNRRAQKKPSEEANQVIQMQAWQEEVERARQSQREAETKISSLEAELQKMRVEMA
Sbjct: 481 QEMEARNRRAQKKPSEEANQVIQMQAWQEEVERARQSQREAETKISSLEAELQKMRVEMA 540

Query: 541 GMKRDAEHYSRQEHVELEKRYRELTDLLYHKQTQLESMASEKAALEFQLEKSIKQFHEVQ 600
           GMKRDAEHYSRQEHVELEKRYRELTDLLYHKQTQLESMASEKAALEFQLEKSIKQFHEVQ
Sbjct: 541 GMKRDAEHYSRQEHVELEKRYRELTDLLYHKQTQLESMASEKAALEFQLEKSIKQFHEVQ 600

Query: 601 MXXXXXXXXXXXXXXXXXDADIKALEPLPLHHRHMATANQQLQKAAKLLDSGAVRATRFL 660
           M                 DADIKALEPLPLHHRHMATANQQLQKAAKLLDSGAVRATRFL
Sbjct: 601 MEAERSRVARRSASAWEEDADIKALEPLPLHHRHMATANQQLQKAAKLLDSGAVRATRFL 660

Query: 661 WRHPVARVSXXXXXXXXXXXXXXXXHRLQDFASREGPTAMGGLANSDLP 709
           WRHPVARVS                HRLQDFASREGPTAMGGLANSDLP
Sbjct: 661 WRHPVARVSLLFYLVFVHLFLMYLMHRLQDFASREGPTAMGGLANSDLP 709



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.308    0.123    0.320 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,954,280
Number of extensions: 551708
Number of successful extensions: 3620
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 3644
Number of HSP's successfully gapped: 3
Length of query: 709
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 601
Effective length of database: 11,396,689
Effective search space: 6849410089
Effective search space used: 6849410089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 160 (66.2 bits)