FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0743100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : IQ calmodulin-binding region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.64 (0.0335) R2 : 0.467
β1 : -2.24 (0.131) R2dD : 0.43 R2D : 0.123
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.12 (0.139) R2dE : 0.385 R2E : 0.0416
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.344 (0.0782) R2dN8 : 0.0387 R2N8 : -0.0927
σ : 0.608
deviance : 170.25
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 27.36
memory length : 2283
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
169.38 0.611 4.59 -2.3 0.323 -2.57 0.0711 -1.73 -0.314 0.196 24.33 4817 -- --
167.82 0.603 4.63 -2.17 0.175 -2.12 0.445 -- -0.313 3.07 27.28 2189 -- --
169.39 0.606 4.59 -2.3 0.322 -2.58 -- -1.74 -0.315 0.0964 24.3 4818 -- --
168.35 0.604 4.64 -2.2 0.201 -2.09 -- -- -0.326 1.84 27.26 2167 -- --
173.73 0.614 4.6 -2.18 -- -2.48 -- -1.52 -0.313 -- 24.6 3604 -- --
248.41 0.739 4.52 -1.4 0.377 -- 0.13 -- 0.202 0.302 -- -- -- --
248.47 0.738 4.52 -1.41 0.377 -- -- -- 0.201 0.192 -- -- -- --
170.25 0.608 4.64 -2.24 -- -2.12 -- -- -0.344 -- 27.36 2283 -- --
264.28 0.761 4.55 -- 0.771 -1.51 -- -- 0.069 1.07 27.26 2167 -- --
257.41 0.75 4.51 -1.39 -- -- -- -- 0.207 -- -- -- -- --
300.62 0.811 4.49 -- 0.358 -- -- -- 0.358 24 -- -- -- --
273.64 0.77 4.52 -- -- -1.36 -- -- 0.172 -- 45.27 1082 -- --
308.7 0.82 4.48 -- -- -- -- -- 0.362 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 168.12 temperature 10 720 > th dose dependent rect. 15 18
7 170.36 temperature 25 4320 < th dose dependent rect. 11 20
14 170.44 temperature 25 4320 < th dose dependent rect. 15 16
20 170.47 temperature 25 4320 < th dose dependent sin 15 NA
40 170.62 temperature 25 4320 < th dose dependent rect. 15 12
51 170.65 temperature 25 4320 < th dose dependent rect. 16 9
60 170.69 temperature 25 4320 < th dose dependent rect. 15 21
76 170.73 temperature 25 4320 < th dose dependent rect. 20 23
101 170.82 temperature 25 4320 < th dose dependent rect. 21 2
103 170.83 temperature 25 4320 < th dose dependent no NA NA
113 170.86 temperature 25 4320 < th dose dependent rect. 2 23
161 171.12 temperature 25 4320 < th dose dependent rect. 20 18
235 171.57 temperature 30 1440 < th dose dependent rect. 6 1
270 171.78 temperature 30 720 < th dose dependent rect. 17 14
283 171.84 temperature 10 4320 > th dose dependent rect. 21 2
286 171.87 temperature 30 1440 < th dose dependent rect. 5 3
293 171.90 temperature 10 1440 > th dose dependent rect. 5 3
318 172.04 temperature 15 1440 > th dose dependent rect. 6 1
348 172.17 temperature 25 270 < th dose dependent rect. 21 22
406 172.40 temperature 10 4320 > th dose dependent rect. 21 10
499 172.66 temperature 10 720 > th dose dependent sin 12 NA
510 172.68 temperature 10 4320 > th dose dependent sin 12 NA
537 172.73 temperature 15 1440 > th dose dependent rect. 18 5
735 173.06 temperature 25 720 < th dose dependent rect. 2 22