BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0743100 Os01g0743100|Os01g0743100
         (378 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G29150.1  | chr4:14378770-14380340 FORWARD LENGTH=400           58   7e-09
AT3G16490.1  | chr3:5603962-5605489 REVERSE LENGTH=390             53   2e-07

>AT4G29150.1 | chr4:14378770-14380340 FORWARD LENGTH=400
          Length = 399

 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 81/206 (39%), Gaps = 27/206 (13%)

Query: 80  GEVENAIARREKAAMVIQKXXXXXXXXXXXXXXXXXVKLQALVRGYLVRKQAATTLHRLQ 139
           G +    +R  +AAM IQ                  VK+QALVRG+LVR QAA TL  ++
Sbjct: 121 GPLGGGKSREHRAAMQIQCAFRGYLARKALRALRGVVKIQALVRGFLVRNQAAATLRSME 180

Query: 140 ALMXXXXXXXXXXXXXXXXXMEQERISVEETRLKTTTPGHRRRLSDSAD--SNYERSPRI 197
           AL+                     R S E             R S S +  +N E + +I
Sbjct: 181 ALVRAQKTVKIQRALRRNGNAAPARKSTE-------------RFSGSLENRNNGEETAKI 227

Query: 198 VEMDTCXXXXXXXXXXXXXXXXXXXDCLTPAPMPPAPLSCSSPISIKQPPRLSIQRSQHH 257
           VE+DT                    D        P   + SSP+S + PPRLS+ + +  
Sbjct: 228 VEVDTGTRPGTYRIRAPVLSGSDFLD-------NPFRRTLSSPLSGRVPPRLSMPKPEWE 280

Query: 258 ERDTRHAKTAHNTPRLGAPPYGSSPA 283
           E  ++   TA +TPR      G SPA
Sbjct: 281 ECSSKFP-TAQSTPRFS----GGSPA 301



>AT3G16490.1 | chr3:5603962-5605489 REVERSE LENGTH=390
          Length = 389

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 54/96 (56%), Gaps = 13/96 (13%)

Query: 116 VKLQALVRGYLVRKQAATTLHRLQALMXXXXXXXXXXXXXXXXXMEQERISVEETRLKTT 175
           VKLQALVRGYLVRK+AA TLH +QAL+                 M   R S+E  RL  +
Sbjct: 133 VKLQALVRGYLVRKRAAETLHSMQALI--RAQTSVRSQRINRNNMFHPRHSLE--RLDDS 188

Query: 176 -TPGHRRRLSDSAD--SNY------ERSPRIVEMDT 202
            +  H +R+S S +  SN+      E SP+IVE+DT
Sbjct: 189 RSEIHSKRISISVEKQSNHNNNAYDETSPKIVEIDT 224



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.129    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,010,728
Number of extensions: 194951
Number of successful extensions: 865
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 868
Number of HSP's successfully gapped: 2
Length of query: 378
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 278
Effective length of database: 8,364,969
Effective search space: 2325461382
Effective search space used: 2325461382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)