Os01g0712700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CMP/dCMP deaminase, zinc-binding domain containing protein.
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Os01g0712700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CMP/dCMP deaminase, zinc-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 285.76 | 0.794 | 10.5 | -0.645 | 3.19 | 1.92 | 3.26 | -0.205 | -0.642 | 7.02 | 94.12 | 772 | 17.9 | 3.22 |
| 284.44 | 0.785 | 10.5 | -0.607 | 3.23 | 1.95 | 3.32 | -- | -0.648 | 7.03 | 95 | 783 | 17.7 | 3.37 |
| 312.09 | 0.823 | 10.5 | -0.587 | 3.23 | 2.04 | -- | -0.262 | -0.624 | 7.08 | 95.01 | 772 | 17.7 | 3.37 |
| 312.18 | 0.823 | 10.5 | -0.577 | 3.23 | 2.04 | -- | -- | -0.632 | 7.08 | 95.22 | 777 | 17.6 | 3.43 |
| 338.82 | 0.857 | 10.6 | -0.584 | -- | 4.49 | -- | 3.91 | -0.677 | -- | 187.7 | 549 | 20.6 | 9.25 |
| 368.4 | 0.9 | 10.5 | -0.665 | 3.8 | -- | 3.14 | -- | -0.661 | 5.85 | -- | -- | -- | -- |
| 391.95 | 0.927 | 10.5 | -0.645 | 3.81 | -- | -- | -- | -0.675 | 5.75 | -- | -- | -- | -- |
| 357.98 | 0.881 | 10.6 | -0.645 | -- | 5.08 | -- | -- | -0.729 | -- | 141.6 | 575 | 20.4 | 9.47 |
| 321.06 | 0.835 | 10.5 | -- | 3.2 | 2.06 | -- | -- | -0.587 | 7.11 | 95 | 776 | 17.7 | 3.33 |
| 1146.81 | 1.58 | 10.6 | -0.526 | -- | -- | -- | -- | -0.585 | -- | -- | -- | -- | -- |
| 402.93 | 0.939 | 10.5 | -- | 3.8 | -- | -- | -- | -0.603 | 5.76 | -- | -- | -- | -- |
| 348.08 | 0.869 | 10.7 | -- | -- | 6.05 | -- | -- | -0.613 | -- | 125.4 | 761 | 17.3 | 13.2 |
| 1154.12 | 1.59 | 10.6 | -- | -- | -- | -- | -- | -0.526 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 294.11 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 13 | 302.31 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 17 | 303.04 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 19 | 303.12 | humidity | 60 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 20 | 303.26 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 17 |
| 22 | 303.49 | humidity | 80 | 720 | < th | dose independent | rect. | 18 | 3 |
| 35 | 304.56 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 10 |
| 68 | 306.41 | humidity | 90 | 720 | < th | dose dependent | sin | 14 | NA |
| 97 | 307.52 | humidity | 70 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 115 | 308.12 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 129 | 308.49 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 5 |
| 168 | 309.63 | humidity | 70 | 720 | > th | dose independent | sin | 11 | NA |
| 185 | 310.07 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 17 |
| 198 | 310.35 | humidity | 90 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 206 | 310.48 | humidity | 60 | 720 | > th | dose dependent | sin | 16 | NA |
| 318 | 312.31 | humidity | 70 | 720 | < th | dose independent | sin | 13 | NA |
| 341 | 312.77 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 12 |
| 350 | 312.98 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 10 |
| 396 | 313.70 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 14 |
| 409 | 313.89 | humidity | 80 | 720 | > th | dose independent | sin | 18 | NA |
| 419 | 314.04 | humidity | 70 | 720 | > th | dose independent | sin | 14 | NA |
| 529 | 315.26 | humidity | 80 | 720 | < th | dose independent | sin | 17 | NA |
| 556 | 315.60 | humidity | 90 | 720 | > th | dose independent | rect. | 19 | 2 |
| 570 | 315.81 | humidity | 90 | 720 | > th | dose dependent | rect. | 12 | 11 |
| 695 | 317.22 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 19 |
| 719 | 317.54 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 16 |
| 726 | 317.58 | temperature | 25 | 270 | < th | dose independent | sin | 7 | NA |
| 734 | 317.67 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 6 |
| 751 | 317.77 | humidity | 80 | 720 | > th | dose independent | rect. | 24 | 22 |
| 773 | 317.95 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 10 |
| 776 | 318.01 | humidity | 80 | 720 | < th | dose independent | rect. | 6 | 16 |
| 792 | 318.12 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 12 |
| 885 | 318.87 | wind | 3 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 888 | 318.89 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 897 | 318.96 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 6 |
| 935 | 319.23 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 21 |
| 997 | 319.67 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 10 |