BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0712700 Os01g0712700|J100034P04
         (312 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0712700  CMP/dCMP deaminase, zinc-binding domain contai...   502   e-142
Os06g0611600                                                      273   1e-73

>Os01g0712700 CMP/dCMP deaminase, zinc-binding domain containing protein
          Length = 312

 Score =  502 bits (1292), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 260/312 (83%), Positives = 260/312 (83%)

Query: 1   MGEEKVAPKSDAAPAVELLGFVMSXXXXXXXXXXXGVETVEDLLPLLVPSAMRRARAPIS 60
           MGEEKVAPKSDAAPAVELLGFVMS           GVETVEDLLPLLVPSAMRRARAPIS
Sbjct: 1   MGEEKVAPKSDAAPAVELLGFVMSAEEAERAAAAAGVETVEDLLPLLVPSAMRRARAPIS 60

Query: 61  RFPVGAVGLGASGRVYAGVNLEFRGLPLSHSVHAEQFLVVNAAAAGESELRAVAVSHMPC 120
           RFPVGAVGLGASGRVYAGVNLEFRGLPLSHSVHAEQFLVVNAAAAGESELRAVAVSHMPC
Sbjct: 61  RFPVGAVGLGASGRVYAGVNLEFRGLPLSHSVHAEQFLVVNAAAAGESELRAVAVSHMPC 120

Query: 121 GHCRQFLQEIRGAGGIRIIVTSDAEDGCAPEWRTVASLLPRPFGPHDLLPKHVPLVLEPH 180
           GHCRQFLQEIRGAGGIRIIVTSDAEDGCAPEWRTVASLLPRPFGPHDLLPKHVPLVLEPH
Sbjct: 121 GHCRQFLQEIRGAGGIRIIVTSDAEDGCAPEWRTVASLLPRPFGPHDLLPKHVPLVLEPH 180

Query: 181 DNPLGEPAAVANGFAHGDXXXXXXXXXXXXXXXXHAPYSECPSGFAVADGEGKVYAGGCL 240
           DNPLGEPAAVANGFAHGD                HAPYSECPSGFAVADGEGKVYAGGCL
Sbjct: 181 DNPLGEPAAVANGFAHGDLEARLREAAEAAARAAHAPYSECPSGFAVADGEGKVYAGGCL 240

Query: 241 ESAAYNPTLGPXXXXXXXXXXXXXXXXXXXXXXXXXEKEAGLVSQEATARIFLAAVAPQA 300
           ESAAYNPTLGP                         EKEAGLVSQEATARIFLAAVAPQA
Sbjct: 241 ESAAYNPTLGPVQAAIIGMVAAGGGAAGDVVAAALVEKEAGLVSQEATARIFLAAVAPQA 300

Query: 301 TFHVYNYTPSDA 312
           TFHVYNYTPSDA
Sbjct: 301 TFHVYNYTPSDA 312



>Os06g0611600 
          Length = 196

 Score =  273 bits (698), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 139/190 (73%), Positives = 152/190 (80%), Gaps = 8/190 (4%)

Query: 52  MRRARAPISRFPVGAVGLGASGRVYAGVNLEFRGLPLSHSVHAEQFLVVNAAAAGESELR 111
           MRRAR PISRFPVGAVGLG SG +YA VNLEFRGLPLSHS+HAEQFLVVNAAA G+S+L 
Sbjct: 1   MRRARVPISRFPVGAVGLGMSGCIYASVNLEFRGLPLSHSIHAEQFLVVNAAAVGKSKLC 60

Query: 112 AVAVSHMPCGHCRQFLQEIRGAGGIRIIVTSDAEDGCAPEWRTVASLLPRPFGPHDLLPK 171
           A+A+SHMPCGHCRQFLQEIRGAGGIRIIVTS        +WRTV+SLLPRPFGPHDLLPK
Sbjct: 61  AIAISHMPCGHCRQFLQEIRGAGGIRIIVTSSDA-----KWRTVSSLLPRPFGPHDLLPK 115

Query: 172 HVPLVLEPHDNPL-GEPAA--VANGFAHGDXXXXXXXXXXXXXXXXHAPYSECPSGFAVA 228
           HVPLVL+PHD+PL G PA   + NGFA+GD                H PYSECPS FAVA
Sbjct: 116 HVPLVLKPHDSPLVGNPATAVITNGFANGDLEARLREAAEAAARAAHTPYSECPSRFAVA 175

Query: 229 DGEGKVYAGG 238
           DGEG+VYAGG
Sbjct: 176 DGEGRVYAGG 185



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,940,670
Number of extensions: 395716
Number of successful extensions: 1060
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1053
Number of HSP's successfully gapped: 2
Length of query: 312
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 211
Effective length of database: 11,762,187
Effective search space: 2481821457
Effective search space used: 2481821457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)