Os01g0702400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os01g0702400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.88 | 0.22 | 10.4 | -0.407 | 0.642 | -0.41 | -0.0718 | -0.213 | -0.102 | 20.3 | 19.64 | 82 | -- | -- |
| 22.04 | 0.219 | 10.4 | -0.4 | 0.643 | -0.416 | -0.201 | -- | -0.101 | 20.3 | 19.63 | 81 | -- | -- |
| 21.9 | 0.218 | 10.4 | -0.406 | 0.642 | -0.409 | -- | -0.242 | -0.102 | 20.3 | 19.64 | 81 | -- | -- |
| 22.15 | 0.219 | 10.4 | -0.395 | 0.642 | -0.408 | -- | -- | -0.102 | 20.3 | 19.63 | 81 | -- | -- |
| 27.49 | 0.244 | 10.4 | -0.357 | -- | -0.716 | -- | -0.296 | -0.0858 | -- | 5.27 | 782 | -- | -- |
| 27 | 0.244 | 10.4 | -0.376 | 0.593 | -- | 0.0602 | -- | -0.0808 | 18.3 | -- | -- | -- | -- |
| 27.01 | 0.243 | 10.4 | -0.377 | 0.594 | -- | -- | -- | -0.0806 | 18.4 | -- | -- | -- | -- |
| 27.05 | 0.242 | 10.4 | -0.4 | -- | -0.762 | -- | -- | -0.122 | -- | 3.98 | 799 | -- | -- |
| 26.27 | 0.239 | 10.4 | -- | 0.643 | -0.411 | -- | -- | -0.0612 | 20.2 | 19.64 | 81 | -- | -- |
| 45.31 | 0.315 | 10.3 | -0.392 | -- | -- | -- | -- | -0.0933 | -- | -- | -- | -- | -- |
| 30.75 | 0.259 | 10.3 | -- | 0.599 | -- | -- | -- | -0.0387 | 18.3 | -- | -- | -- | -- |
| 30.86 | 0.259 | 10.3 | -- | -- | -0.719 | -- | -- | -0.0805 | -- | 7.9 | 768 | -- | -- |
| 49.37 | 0.328 | 10.3 | -- | -- | -- | -- | -- | -0.0498 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.69 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 2 | 12 |
| 9 | 20.96 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 10 | 20.98 | radiation | 20.0 | 90 | < th | dose independent | rect. | 4 | 16 |
| 14 | 21.05 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 12 |
| 21 | 21.11 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 15 |
| 25 | 21.17 | radiation | 30.0 | 270 | < th | dose dependent | sin | 5 | NA |
| 29 | 21.20 | radiation | 20.0 | 90 | < th | dose independent | rect. | 4 | 11 |
| 65 | 21.44 | radiation | 1.0 | 270 | > th | dose dependent | sin | 6 | NA |
| 73 | 21.48 | radiation | 20.0 | 90 | < th | dose independent | rect. | 4 | 7 |
| 81 | 21.50 | radiation | 20.0 | 10 | < th | dose independent | rect. | 4 | 16 |
| 99 | 21.59 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 23 |
| 103 | 21.62 | radiation | 10.0 | 30 | > th | dose independent | rect. | 9 | 7 |
| 110 | 21.65 | radiation | 10.0 | 270 | < th | dose independent | sin | 5 | NA |
| 120 | 21.68 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 121 | 21.69 | radiation | 20.0 | 90 | < th | dose independent | sin | 2 | NA |
| 152 | 21.73 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 155 | 21.74 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 166 | 21.76 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 8 | 8 |
| 173 | 21.78 | radiation | 20.0 | 90 | < th | dose independent | rect. | 11 | 22 |
| 176 | 21.80 | radiation | 20.0 | 10 | < th | dose independent | rect. | 4 | 10 |
| 201 | 21.84 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 8 | 10 |
| 219 | 21.86 | wind | 5.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 241 | 21.89 | radiation | 30.0 | 90 | < th | dose independent | rect. | 4 | 5 |
| 264 | 21.95 | radiation | 10.0 | 270 | > th | dose independent | sin | 5 | NA |
| 287 | 21.97 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 293 | 21.99 | radiation | 40.0 | 90 | < th | dose dependent | sin | 1 | NA |
| 323 | 22.01 | wind | 9.0 | 30 | < th | dose independent | rect. | 9 | 19 |
| 329 | 22.02 | radiation | 20.0 | 10 | < th | dose independent | rect. | 4 | 8 |
| 340 | 22.03 | wind | 9.0 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 343 | 22.03 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 345 | 22.04 | humidity | 70.0 | 90 | > th | dose independent | rect. | 4 | 5 |
| 359 | 22.04 | radiation | 30.0 | 270 | < th | dose independent | rect. | 11 | 20 |
| 406 | 22.05 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 440 | 22.06 | radiation | 1.0 | 90 | > th | dose dependent | sin | 1 | NA |
| 442 | 22.07 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 5 |
| 443 | 22.07 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 450 | 22.09 | radiation | 20.0 | 90 | > th | dose independent | sin | 2 | NA |
| 455 | 22.09 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 457 | 22.09 | temperature | 30.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 458 | 22.09 | humidity | 50.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 460 | 22.09 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 461 | 22.09 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 464 | 22.09 | temperature | 10.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 495 | 22.10 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 511 | 22.12 | radiation | 20.0 | 90 | < th | dose independent | no | NA | NA |
| 539 | 22.13 | radiation | 30.0 | 10 | < th | dose independent | rect. | 12 | 21 |
| 544 | 22.14 | radiation | 20.0 | 90 | < th | dose independent | rect. | 15 | 23 |
| 556 | 22.16 | radiation | 20.0 | 90 | < th | dose independent | rect. | 1 | 23 |
| 571 | 22.19 | radiation | 20.0 | 270 | > th | dose independent | rect. | 9 | 2 |
| 607 | 22.22 | radiation | 20.0 | 90 | > th | dose independent | rect. | 8 | 23 |
| 644 | 22.25 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 655 | 22.26 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 667 | 22.27 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 692 | 22.29 | humidity | 70.0 | 90 | > th | dose independent | rect. | 19 | 9 |
| 694 | 22.29 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 19 |
| 698 | 22.29 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 19 |
| 704 | 22.30 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 4 | 10 |
| 850 | 22.35 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 903 | 22.38 | radiation | 30.0 | 10 | < th | dose dependent | sin | 23 | NA |
| 915 | 22.39 | humidity | 50.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 924 | 22.40 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 929 | 22.41 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 4 | 16 |
| 931 | 22.41 | radiation | 20.0 | 90 | < th | dose independent | rect. | 21 | 23 |
| 940 | 22.42 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 946 | 22.42 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 18 | 9 |
| 949 | 22.43 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 984 | 22.44 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 15 |
| 986 | 22.44 | radiation | 1.0 | 90 | > th | dose dependent | no | NA | NA |
| 996 | 22.44 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 15 |