BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0702400 Os01g0702400|AK121315
         (901 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G49400.1  | chr3:18319249-18324373 REVERSE LENGTH=893          404   e-113

>AT3G49400.1 | chr3:18319249-18324373 REVERSE LENGTH=893
          Length = 892

 Score =  404 bits (1039), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 249/671 (37%), Positives = 352/671 (52%), Gaps = 78/671 (11%)

Query: 307 NGEDK-SLPL--------ITAKQYSCREALLSSLVVAWSPVLP-SPDRSSYFTGHWCILA 356
           NG+D+ SLP         I+ + Y  REALLSS  VAWS +L  S + S      + +LA
Sbjct: 224 NGQDRRSLPKALKKCSQEISPQTYVSREALLSSHSVAWSSLLRFSSESSCGNMLRFSLLA 283

Query: 357 VGCKSGSVSFWKIHKPEYYTIDIGMVTRDPMLIGVVQAHLSWVTAISWELFSSGSSKPLL 416
           +G KSGSVS WK+H PE Y I+   V+    L  +VQ H SWV+ +SW +F   SS P +
Sbjct: 284 IGSKSGSVSIWKVHAPECYHIERSNVSPMVELTAIVQTHSSWVSTMSWGIFGCDSSNPQV 343

Query: 417 LLATGCSDGSSKIWLGDIEGLNQCTCAKEVPLTLVAEVTTDSLAPVSSISLSAPAQHQDS 476
           +L TG  DGS KIW+ + E L       +    L+ EV   +   VS++S    + H ++
Sbjct: 344 VLVTGSCDGSVKIWMSNKEDLQNSVEVYKSSFFLLKEVVAVNPVQVSTLSFVV-SNHYNA 402

Query: 477 VNLAIGRASGSLEAWSWNISGNKIQKIHACDAHDQVVTGLSWGFHGHCLYSCSQDNSAHC 536
           ++LAIG+ SGS E W   IS  K ++I + +AH+QVVTGL+W + G CLYSCSQDN    
Sbjct: 403 MHLAIGKGSGSFEVWKCEISTRKFEQIVSTNAHNQVVTGLAWSYDGRCLYSCSQDNYVRS 462

Query: 537 WMFNEKHLEEIPLHTDGPELKESVDLTEVSDRCYGLALAPGELMIAVVRSLDSNLLNQMY 596
           W+  E  + E+P+  + P L  + DL +    C G+AL+PG L +A+VR+ +  LLN MY
Sbjct: 463 WILCENAISEVPIPANTPGLSSTTDLPDDFLSCLGVALSPGNLAVALVRNFNVELLNPMY 522

Query: 597 QARTQKAVVEFIWIGGQFLGIPLDNSVILSLQSAALSETNFLWWGSNIFWSLKKYENCET 656
           QAR+QKA VEF+W G Q  G   D++  ++      S+  F  W SNI WSLK++     
Sbjct: 523 QARSQKAAVEFLWNGAQQSGESEDSTETVTEAILGFSKNEFANWESNILWSLKEFNYLNK 582

Query: 657 VLVLWDLIAALQGFKKSAPTFLETLMHKWVS--------------------EKGNDVMAD 696
            LVLWD++AA+  FK+S P F+E ++ KW+S                    ++ +DV + 
Sbjct: 583 PLVLWDMVAAMLAFKQSMPEFVELVLTKWLSVSYLGFHDDISMEDLVPKITKRFSDVPSR 642

Query: 697 LWNNLLVRSER--------------------------------------ELQERLVAFTF 718
           L + L V S R                                      EL+ERLV  +F
Sbjct: 643 LLHILNVISRRVMLSELKTEEINRKLQGQRTNDEGEIDLWLKLLQESERELRERLVGLSF 702

Query: 719 AAVLNRTAYLLKGAPAENSWFPVGVAQMDSWASMNDGEVRDELKFLRTRINDLGDRINSV 778
           +A L   +     +P   +W P G+A +  W  +N   V  +L+ L   +     R ++ 
Sbjct: 703 SAYLLAESSQGTISPPSWNWRPAGLALLQQWVEINRDIVHSQLETLSLEVKSSRTRSSNS 762

Query: 779 CEYSV-EEYCTYCNAPVPFESADVAMCSGSNPATPPA-------EAHKLSRCTASMRLCP 830
            E ++ EE C YC APV F SA+ A C  S+     +       E+HKL RC  SM++CP
Sbjct: 763 TETALEEEKCPYCAAPVNFHSAEEAFCESSHQKKKKSKDKERCDESHKLERCCVSMQVCP 822

Query: 831 VLQPTWHCACCGRTVDKLLPEIFFTMPTSFWDVTHGNESLDLSAPAVPFCPFCGILLQRI 890
              P W C CC R   +L PE  F +P+   D+    +S      + PFC FCG+LLQR 
Sbjct: 823 P-TPLWFCKCCNRMTLELAPETLFALPSFPSDLKSLPKSSFSKVASKPFCLFCGVLLQRK 881

Query: 891 KPEFLLSVSPV 901
           +PEFLLS SPV
Sbjct: 882 QPEFLLSASPV 892




 Score =  189 bits (479), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 89/203 (43%), Positives = 131/203 (64%), Gaps = 8/203 (3%)

Query: 1   MASHYQAATLIASPSYPNAIAWSTENLVAVASGHLITILNPSALEGPRELVVLRPSDPFP 60
           MAS +Q A+L+ SPSYPNA+AWS+ENL+AVA+GHL+ I+NP+   GPR L+ +  ++ + 
Sbjct: 1   MASRFQEASLVTSPSYPNAVAWSSENLIAVAAGHLVIIINPALPTGPRGLITISDAELYQ 60

Query: 61  IGVVNREDLFEPCIMPTSLARETELCARSISWSQQGFSPNSGCLLAVCTVDGHVKLYRSP 120
           IG V  +DL    ++P+SL RE   C RS+SWS+ G SPN GCLLAVCT +G VKLYR P
Sbjct: 61  IGRVRSQDLLTGGLLPSSLKRERSPCVRSLSWSEIGMSPNHGCLLAVCTAEGRVKLYRPP 120

Query: 121 FCEFCDEWVEVADISRLLFKFYKGIEFGENDGPSSLPQEKENTEQNQQVMCIGKLQEPLL 180
           + +FC EW+E+ DIS++L++    + FGE+  PS+   + +  E + +        E + 
Sbjct: 121 YSDFCAEWIEIVDISKMLYENLSSMNFGESKNPSTSLSKDQVVEHDHEE------DERIS 174

Query: 181 SMGTERRKRKPARFEGFVYHEDN 203
           S+   +R++  A       HE N
Sbjct: 175 SLKARKRRKTSAN--NINLHEKN 195



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.133    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 20,925,666
Number of extensions: 919969
Number of successful extensions: 2134
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2126
Number of HSP's successfully gapped: 3
Length of query: 901
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 793
Effective length of database: 8,145,641
Effective search space: 6459493313
Effective search space used: 6459493313
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)