BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0702400 Os01g0702400|AK121315
         (901 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0702400  WD40-like domain containing protein                1837   0.0  

>Os01g0702400 WD40-like domain containing protein
          Length = 901

 Score = 1837 bits (4758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 891/901 (98%), Positives = 891/901 (98%)

Query: 1   MASHYQAATLIASPSYPNAIAWSTENLVAVASGHLITILNPSALEGPRELVVLRPSDPFP 60
           MASHYQAATLIASPSYPNAIAWSTENLVAVASGHLITILNPSALEGPRELVVLRPSDPFP
Sbjct: 1   MASHYQAATLIASPSYPNAIAWSTENLVAVASGHLITILNPSALEGPRELVVLRPSDPFP 60

Query: 61  IGVVNREDLFEPCIMPTSLARETELCARSISWSQQGFSPNSGCLLAVCTVDGHVKLYRSP 120
           IGVVNREDLFEPCIMPTSLARETELCARSISWSQQGFSPNSGCLLAVCTVDGHVKLYRSP
Sbjct: 61  IGVVNREDLFEPCIMPTSLARETELCARSISWSQQGFSPNSGCLLAVCTVDGHVKLYRSP 120

Query: 121 FCEFCDEWVEVADISRLLFKFYKGIEFGENDGPSSLPQEKENTEQNQQVMCIGKLQEPLL 180
           FCEFCDEWVEVADISRLLFKFYKGIEFGENDGPSSLPQEKENTEQNQQVMCIGKLQEPLL
Sbjct: 121 FCEFCDEWVEVADISRLLFKFYKGIEFGENDGPSSLPQEKENTEQNQQVMCIGKLQEPLL 180

Query: 181 SMGTERRKRKPARFEGFVYHEDNGGVDAPMDADFLLDPISNLKKKTLKKRSVDAPKDVDF 240
           SMGTERRKRKPARFEGFVYHEDNGGVDAPMDADFLLDPISNLKKKTLKKRSVDAPKDVDF
Sbjct: 181 SMGTERRKRKPARFEGFVYHEDNGGVDAPMDADFLLDPISNLKKKTLKKRSVDAPKDVDF 240

Query: 241 ISDPSNLKKKTSEKXXXXXXXXXXFSLDPISNLKKNTLKKVTRPGLDDAVRNGQGNTQNI 300
           ISDPSNLKKKTSEK          FSLDPISNLKKNTLKKVTRPGLDDAVRNGQGNTQNI
Sbjct: 241 ISDPSNLKKKTSEKDDVDDPKDADFSLDPISNLKKNTLKKVTRPGLDDAVRNGQGNTQNI 300

Query: 301 QTPSYCNGEDKSLPLITAKQYSCREALLSSLVVAWSPVLPSPDRSSYFTGHWCILAVGCK 360
           QTPSYCNGEDKSLPLITAKQYSCREALLSSLVVAWSPVLPSPDRSSYFTGHWCILAVGCK
Sbjct: 301 QTPSYCNGEDKSLPLITAKQYSCREALLSSLVVAWSPVLPSPDRSSYFTGHWCILAVGCK 360

Query: 361 SGSVSFWKIHKPEYYTIDIGMVTRDPMLIGVVQAHLSWVTAISWELFSSGSSKPLLLLAT 420
           SGSVSFWKIHKPEYYTIDIGMVTRDPMLIGVVQAHLSWVTAISWELFSSGSSKPLLLLAT
Sbjct: 361 SGSVSFWKIHKPEYYTIDIGMVTRDPMLIGVVQAHLSWVTAISWELFSSGSSKPLLLLAT 420

Query: 421 GCSDGSSKIWLGDIEGLNQCTCAKEVPLTLVAEVTTDSLAPVSSISLSAPAQHQDSVNLA 480
           GCSDGSSKIWLGDIEGLNQCTCAKEVPLTLVAEVTTDSLAPVSSISLSAPAQHQDSVNLA
Sbjct: 421 GCSDGSSKIWLGDIEGLNQCTCAKEVPLTLVAEVTTDSLAPVSSISLSAPAQHQDSVNLA 480

Query: 481 IGRASGSLEAWSWNISGNKIQKIHACDAHDQVVTGLSWGFHGHCLYSCSQDNSAHCWMFN 540
           IGRASGSLEAWSWNISGNKIQKIHACDAHDQVVTGLSWGFHGHCLYSCSQDNSAHCWMFN
Sbjct: 481 IGRASGSLEAWSWNISGNKIQKIHACDAHDQVVTGLSWGFHGHCLYSCSQDNSAHCWMFN 540

Query: 541 EKHLEEIPLHTDGPELKESVDLTEVSDRCYGLALAPGELMIAVVRSLDSNLLNQMYQART 600
           EKHLEEIPLHTDGPELKESVDLTEVSDRCYGLALAPGELMIAVVRSLDSNLLNQMYQART
Sbjct: 541 EKHLEEIPLHTDGPELKESVDLTEVSDRCYGLALAPGELMIAVVRSLDSNLLNQMYQART 600

Query: 601 QKAVVEFIWIGGQFLGIPLDNSVILSLQSAALSETNFLWWGSNIFWSLKKYENCETVLVL 660
           QKAVVEFIWIGGQFLGIPLDNSVILSLQSAALSETNFLWWGSNIFWSLKKYENCETVLVL
Sbjct: 601 QKAVVEFIWIGGQFLGIPLDNSVILSLQSAALSETNFLWWGSNIFWSLKKYENCETVLVL 660

Query: 661 WDLIAALQGFKKSAPTFLETLMHKWVSEKGNDVMADLWNNLLVRSERELQERLVAFTFAA 720
           WDLIAALQGFKKSAPTFLETLMHKWVSEKGNDVMADLWNNLLVRSERELQERLVAFTFAA
Sbjct: 661 WDLIAALQGFKKSAPTFLETLMHKWVSEKGNDVMADLWNNLLVRSERELQERLVAFTFAA 720

Query: 721 VLNRTAYLLKGAPAENSWFPVGVAQMDSWASMNDGEVRDELKFLRTRINDLGDRINSVCE 780
           VLNRTAYLLKGAPAENSWFPVGVAQMDSWASMNDGEVRDELKFLRTRINDLGDRINSVCE
Sbjct: 721 VLNRTAYLLKGAPAENSWFPVGVAQMDSWASMNDGEVRDELKFLRTRINDLGDRINSVCE 780

Query: 781 YSVEEYCTYCNAPVPFESADVAMCSGSNPATPPAEAHKLSRCTASMRLCPVLQPTWHCAC 840
           YSVEEYCTYCNAPVPFESADVAMCSGSNPATPPAEAHKLSRCTASMRLCPVLQPTWHCAC
Sbjct: 781 YSVEEYCTYCNAPVPFESADVAMCSGSNPATPPAEAHKLSRCTASMRLCPVLQPTWHCAC 840

Query: 841 CGRTVDKLLPEIFFTMPTSFWDVTHGNESLDLSAPAVPFCPFCGILLQRIKPEFLLSVSP 900
           CGRTVDKLLPEIFFTMPTSFWDVTHGNESLDLSAPAVPFCPFCGILLQRIKPEFLLSVSP
Sbjct: 841 CGRTVDKLLPEIFFTMPTSFWDVTHGNESLDLSAPAVPFCPFCGILLQRIKPEFLLSVSP 900

Query: 901 V 901
           V
Sbjct: 901 V 901



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.133    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 32,747,017
Number of extensions: 1426360
Number of successful extensions: 3040
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3032
Number of HSP's successfully gapped: 1
Length of query: 901
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 791
Effective length of database: 11,292,261
Effective search space: 8932178451
Effective search space used: 8932178451
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)