Os01g0691600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA repair helicase XPB2 (EC 3.6.1.-) (XPB homolog 2) (ERCC3 homolog 2) (RAD25 homolog 2) (AtXPB2).
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Os01g0691600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA repair helicase XPB2 (EC 3.6.1.-) (XPB homolog 2) (ERCC3 homolog 2) (RAD25 homolog 2) (AtXPB2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10.96 | 0.156 | 10.4 | -0.209 | 0.542 | -1.24 | -0.572 | 0.751 | 0.035 | 19.6 | 1.347 | 753 | -- | -- |
| 10.94 | 0.154 | 10.4 | -0.272 | 0.545 | -1.25 | -0.37 | -- | 0.0398 | 20.3 | 1.23 | 803 | -- | -- |
| 10.88 | 0.154 | 10.4 | -0.224 | 0.563 | -1.24 | -- | -0.0748 | 0.0348 | 20.7 | 1.43 | 836 | -- | -- |
| 10.86 | 0.153 | 10.4 | -0.201 | 0.588 | -1.29 | -- | -- | 0.0244 | 20.2 | 1.02 | 809 | -- | -- |
| 12.76 | 0.166 | 10.4 | -0.234 | -- | -0.829 | -- | -0.0287 | 0.0748 | -- | 1.389 | 1950 | -- | -- |
| 14.79 | 0.18 | 10.4 | -0.296 | 0.486 | -- | -0.21 | -- | -0.0183 | 4.16 | -- | -- | -- | -- |
| 14.91 | 0.181 | 10.4 | -0.293 | 0.486 | -- | -- | -- | -0.0171 | 4.22 | -- | -- | -- | -- |
| 12.71 | 0.166 | 10.4 | -0.221 | -- | -0.822 | -- | -- | 0.0541 | -- | 1.431 | 1954 | -- | -- |
| 11.72 | 0.159 | 10.4 | -- | 0.704 | -1.46 | -- | -- | 0.0502 | 20.2 | 0.66 | 828 | -- | -- |
| 27.67 | 0.246 | 10.4 | -0.274 | -- | -- | -- | -- | -0.00422 | -- | -- | -- | -- | -- |
| 17.17 | 0.194 | 10.4 | -- | 0.48 | -- | -- | -- | 0.0155 | 4.24 | -- | -- | -- | -- |
| 13.9 | 0.174 | 10.4 | -- | -- | -0.823 | -- | -- | 0.0614 | -- | 1.09 | 1953 | -- | -- |
| 29.65 | 0.254 | 10.4 | -- | -- | -- | -- | -- | 0.0262 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.44 | radiation | 1.0 | 720 | > th | dose independent | sin | 15 | NA |
| 2 | 10.44 | radiation | 1.0 | 720 | > th | dose independent | rect. | 16 | 14 |
| 4 | 10.45 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 5 | 10.46 | radiation | 1.0 | 720 | < th | dose independent | rect. | 9 | 15 |
| 8 | 10.49 | radiation | 1.0 | 720 | < th | dose independent | rect. | 11 | 13 |
| 10 | 10.49 | radiation | 1.0 | 720 | < th | dose independent | rect. | 5 | 19 |
| 11 | 10.50 | radiation | 1.0 | 720 | < th | dose independent | rect. | 13 | 11 |
| 16 | 10.55 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 9 | 15 |
| 21 | 10.58 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 25 | 10.59 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 13 | 11 |
| 30 | 10.62 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 4 |
| 49 | 10.69 | radiation | 1.0 | 720 | < th | dose dependent | sin | 18 | NA |
| 51 | 10.71 | radiation | 1.0 | 720 | > th | dose independent | rect. | 8 | 22 |
| 57 | 10.76 | radiation | 1.0 | 720 | > th | dose independent | rect. | 7 | 12 |
| 70 | 10.77 | radiation | 1.0 | 720 | < th | dose independent | sin | 18 | NA |
| 86 | 10.79 | radiation | 1.0 | 720 | < th | dose independent | sin | 15 | NA |
| 127 | 10.85 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 130 | 10.86 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 176 | 11.06 | radiation | 1.0 | 720 | < th | dose independent | rect. | 13 | 17 |
| 177 | 11.06 | radiation | 1.0 | 720 | < th | dose independent | rect. | 11 | 19 |
| 181 | 11.06 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 203 | 11.09 | temperature | 25.0 | 720 | > th | dose dependent | sin | 16 | NA |
| 228 | 11.12 | radiation | 1.0 | 720 | > th | dose independent | rect. | 13 | 23 |
| 250 | 11.16 | radiation | 1.0 | 720 | < th | dose independent | rect. | 1 | 23 |
| 260 | 11.18 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 23 |
| 261 | 11.18 | radiation | 1.0 | 720 | < th | dose independent | rect. | 3 | 23 |
| 269 | 11.20 | radiation | 1.0 | 720 | < th | dose independent | rect. | 4 | 14 |
| 341 | 11.28 | radiation | 1.0 | 720 | > th | dose independent | rect. | 16 | 20 |
| 356 | 11.29 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 4 | 14 |
| 380 | 11.33 | radiation | 1.0 | 720 | < th | dose dependent | sin | 0 | NA |
| 421 | 11.37 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 447 | 11.39 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 11 | 19 |
| 448 | 11.40 | radiation | 1.0 | 720 | > th | dose independent | no | NA | NA |
| 499 | 11.40 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 13 | 17 |
| 508 | 11.41 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 519 | 11.43 | radiation | 1.0 | 720 | < th | dose independent | rect. | 19 | 23 |
| 568 | 11.48 | radiation | 1.0 | 720 | < th | dose independent | no | NA | NA |
| 570 | 11.49 | humidity | 70.0 | 720 | > th | dose independent | rect. | 13 | 18 |
| 573 | 11.49 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 579 | 11.50 | humidity | 80.0 | 720 | < th | dose independent | rect. | 7 | 12 |
| 612 | 11.53 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 638 | 11.56 | humidity | 70.0 | 720 | > th | dose independent | rect. | 14 | 10 |
| 662 | 11.58 | humidity | 70.0 | 720 | > th | dose independent | rect. | 1 | 23 |
| 663 | 11.58 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 15 | 4 |
| 672 | 11.59 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 696 | 11.60 | humidity | 70.0 | 720 | > th | dose independent | rect. | 3 | 21 |
| 715 | 11.61 | humidity | 70.0 | 720 | < th | dose independent | rect. | 14 | 22 |
| 733 | 11.62 | humidity | 70.0 | 720 | > th | dose independent | rect. | 13 | 21 |
| 749 | 11.63 | temperature | 30.0 | 720 | < th | dose independent | rect. | 12 | 19 |
| 770 | 11.64 | humidity | 70.0 | 720 | > th | dose independent | rect. | 18 | 23 |
| 795 | 11.65 | temperature | 25.0 | 720 | > th | dose dependent | no | NA | NA |
| 803 | 11.65 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 820 | 11.67 | humidity | 70.0 | 720 | > th | dose independent | sin | 15 | NA |
| 821 | 11.67 | wind | 7.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 826 | 11.67 | temperature | 25.0 | 720 | < th | dose independent | rect. | 15 | 7 |
| 838 | 11.67 | humidity | 70.0 | 720 | < th | dose independent | rect. | 14 | 20 |
| 849 | 11.68 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 868 | 11.68 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 16 | 2 |
| 929 | 11.71 | temperature | 25.0 | 720 | < th | dose independent | rect. | 10 | 14 |
| 930 | 11.71 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 14 |
| 948 | 11.71 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 950 | 11.72 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 951 | 11.72 | humidity | 80.0 | 720 | < th | dose independent | rect. | 15 | 4 |
| 959 | 11.72 | radiation | 1.0 | 720 | > th | dose independent | rect. | 11 | 23 |
| 983 | 11.73 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 11 |