BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0691600 Os01g0691600|AK103297
(580 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G41360.1 | chr5:16544574-16549121 FORWARD LENGTH=767 962 0.0
AT5G41370.1 | chr5:16551337-16555792 FORWARD LENGTH=768 952 0.0
>AT5G41360.1 | chr5:16544574-16549121 FORWARD LENGTH=767
Length = 766
Score = 962 bits (2488), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/528 (87%), Positives = 491/528 (92%)
Query: 52 FTKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPH 111
FT LELKPDH NRPLWACADG+IFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPH
Sbjct: 52 FTDLELKPDHGNRPLWACADGKIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPH 111
Query: 112 SLYAAVSVGLETSTIISVMSKLSKTKLPREIIDFIHASTANYGKVKLVLKKNRYFVESPF 171
SLYAAVSVGLET TIISV++KLSKTKLP EIIDFIHASTANYGKVKLVLKKNRYF+ESPF
Sbjct: 112 SLYAAVSVGLETETIISVLNKLSKTKLPGEIIDFIHASTANYGKVKLVLKKNRYFIESPF 171
Query: 172 PEVLKTLLKDDIICRARISPEDSVGAPSFTISKTAGEMASGHEDLLDGMELAAATEDKET 231
PEVLK LL DD+I RAR + E G FTI KT+GE+ +G +LL+ ELAAA E+KET
Sbjct: 172 PEVLKRLLSDDVINRARFTSEPYYGGDGFTIGKTSGELEAGPGELLNEAELAAAAEEKET 231
Query: 232 HSFEIDPSQVENVKQRCLPNALNFPMLEEYDFRNDTVNPDLEMELKPQARPRPYQEKSLS 291
HSFEIDP+ VENVKQRCLPNALN+PMLEEYDFRND VNPDL+MELKP A+PRPYQEKSLS
Sbjct: 232 HSFEIDPALVENVKQRCLPNALNYPMLEEYDFRNDNVNPDLDMELKPHAQPRPYQEKSLS 291
Query: 292 KMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIK 351
KMFGNGRARSGIIVLPCGAGKSLVGVSAA RIKKSCLCLATNAVSVDQWA+QFKLWSTIK
Sbjct: 292 KMFGNGRARSGIIVLPCGAGKSLVGVSAAARIKKSCLCLATNAVSVDQWAYQFKLWSTIK 351
Query: 352 DEHISRFTSDNKEKFRGMAGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVH 411
D+ I RFTSD+KE+FRG AGVVVTTYNM+AFGGKRSE++EKIIEE+RNREWGLLLMDEVH
Sbjct: 352 DDQICRFTSDSKERFRGNAGVVVTTYNMIAFGGKRSEEAEKIIEEMRNREWGLLLMDEVH 411
Query: 412 VVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIAN 471
VVPAHMFRKVISITKSHCKLGLTATLVREDE+ITDLNFLIGPKLYEANWLDLVKGGFIAN
Sbjct: 412 VVPAHMFRKVISITKSHCKLGLTATLVREDEKITDLNFLIGPKLYEANWLDLVKGGFIAN 471
Query: 472 VQCAEVWCPMTKEFFAEYLKKENSKKKQVLYAMNPNKFRACEFLIRFHEQQRGDKIIVFA 531
VQCAEVWCPMTKEFFAEYLKKENSKKKQ LY MNPNKFRACEFLIRFHEQQRGDKIIVFA
Sbjct: 472 VQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFA 531
Query: 532 DNLFALTSYAMKLRKPMIYGSTSHVERTRILHQFKNSSDVNTIFLSKV 579
DNLFALT YAMKLRKPMIYG+TSH+ERT+IL FK S VNT+FLSKV
Sbjct: 532 DNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSKTVNTVFLSKV 579
>AT5G41370.1 | chr5:16551337-16555792 FORWARD LENGTH=768
Length = 767
Score = 952 bits (2461), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/528 (87%), Positives = 493/528 (93%)
Query: 52 FTKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPH 111
FTKLELKPDH NRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPH
Sbjct: 52 FTKLELKPDHGNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPH 111
Query: 112 SLYAAVSVGLETSTIISVMSKLSKTKLPREIIDFIHASTANYGKVKLVLKKNRYFVESPF 171
SLYAAVSVGLET TIISV++KLSKTKLP+E+I+FIHASTANYGKVKLVLKKNRYF+ESPF
Sbjct: 112 SLYAAVSVGLETETIISVLNKLSKTKLPKEMIEFIHASTANYGKVKLVLKKNRYFIESPF 171
Query: 172 PEVLKTLLKDDIICRARISPEDSVGAPSFTISKTAGEMASGHEDLLDGMELAAATEDKET 231
PEVLK LL DD+I RAR S E G F++ +T GE+ +G +LL+ E AAA E+KET
Sbjct: 172 PEVLKRLLSDDVINRARFSSEPYYGGDGFSVGRTCGELEAGPGELLNEAEFAAAAEEKET 231
Query: 232 HSFEIDPSQVENVKQRCLPNALNFPMLEEYDFRNDTVNPDLEMELKPQARPRPYQEKSLS 291
HSFEIDP+QVENVKQRCLPNALN+PMLEEYDFRND VNPDL+MELKP A+PRPYQEKSLS
Sbjct: 232 HSFEIDPAQVENVKQRCLPNALNYPMLEEYDFRNDNVNPDLDMELKPHAQPRPYQEKSLS 291
Query: 292 KMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIK 351
KMFGNGRARSGIIVLPCGAGKSLVGVSAA RIKKSCLCLATNAVSVDQWAFQFKLWSTI+
Sbjct: 292 KMFGNGRARSGIIVLPCGAGKSLVGVSAAARIKKSCLCLATNAVSVDQWAFQFKLWSTIR 351
Query: 352 DEHISRFTSDNKEKFRGMAGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVH 411
D+ I RFTSD+KE+FRG AGVVVTTYNMVAFGGKRSE+SEKIIEE+RNREWGLLLMDEVH
Sbjct: 352 DDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEMRNREWGLLLMDEVH 411
Query: 412 VVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIAN 471
VVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIAN
Sbjct: 412 VVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIAN 471
Query: 472 VQCAEVWCPMTKEFFAEYLKKENSKKKQVLYAMNPNKFRACEFLIRFHEQQRGDKIIVFA 531
VQCAEVWCPMTKEFFAEYLKKENSKKKQ LY MNPNKFRACEFLIRFHEQQRGDKIIVFA
Sbjct: 472 VQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFA 531
Query: 532 DNLFALTSYAMKLRKPMIYGSTSHVERTRILHQFKNSSDVNTIFLSKV 579
DNLFALT YAMKLRKPMIYG+TSH+ERT+IL FK S DVNT+FLSKV
Sbjct: 532 DNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSKDVNTVFLSKV 579
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.134 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,439,614
Number of extensions: 525285
Number of successful extensions: 1202
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1202
Number of HSP's successfully gapped: 2
Length of query: 580
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 476
Effective length of database: 8,255,305
Effective search space: 3929525180
Effective search space used: 3929525180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)