BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0691600 Os01g0691600|AK103297
(580 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0691600 Similar to DNA repair helicase XPB2 (EC 3.6.1.... 1167 0.0
>Os01g0691600 Similar to DNA repair helicase XPB2 (EC 3.6.1.-) (XPB homolog 2)
(ERCC3 homolog 2) (RAD25 homolog 2) (AtXPB2)
Length = 580
Score = 1167 bits (3018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/580 (96%), Positives = 562/580 (96%)
Query: 1 MAGGDGDRARAPKRHKSSAPSRSIDETAELDYTXXXXXXXXXXXXXXXXXXFTKLELKPD 60
MAGGDGDRARAPKRHKSSAPSRSIDETAELDYT FTKLELKPD
Sbjct: 1 MAGGDGDRARAPKRHKSSAPSRSIDETAELDYTDDVDDDVRDADREVKKRDFTKLELKPD 60
Query: 61 HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 120
HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG
Sbjct: 61 HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 120
Query: 121 LETSTIISVMSKLSKTKLPREIIDFIHASTANYGKVKLVLKKNRYFVESPFPEVLKTLLK 180
LETSTIISVMSKLSKTKLPREIIDFIHASTANYGKVKLVLKKNRYFVESPFPEVLKTLLK
Sbjct: 121 LETSTIISVMSKLSKTKLPREIIDFIHASTANYGKVKLVLKKNRYFVESPFPEVLKTLLK 180
Query: 181 DDIICRARISPEDSVGAPSFTISKTAGEMASGHEDLLDGMELAAATEDKETHSFEIDPSQ 240
DDIICRARISPEDSVGAPSFTISKTAGEMASGHEDLLDGMELAAATEDKETHSFEIDPSQ
Sbjct: 181 DDIICRARISPEDSVGAPSFTISKTAGEMASGHEDLLDGMELAAATEDKETHSFEIDPSQ 240
Query: 241 VENVKQRCLPNALNFPMLEEYDFRNDTVNPDLEMELKPQARPRPYQEKSLSKMFGNGRAR 300
VENVKQRCLPNALNFPMLEEYDFRNDTVNPDLEMELKPQARPRPYQEKSLSKMFGNGRAR
Sbjct: 241 VENVKQRCLPNALNFPMLEEYDFRNDTVNPDLEMELKPQARPRPYQEKSLSKMFGNGRAR 300
Query: 301 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDEHISRFTS 360
SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDEHISRFTS
Sbjct: 301 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDEHISRFTS 360
Query: 361 DNKEKFRGMAGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVHVVPAHMFRK 420
DNKEKFRGMAGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVHVVPAHMFRK
Sbjct: 361 DNKEKFRGMAGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVHVVPAHMFRK 420
Query: 421 VISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP 480
VISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP
Sbjct: 421 VISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP 480
Query: 481 MTKEFFAEYLKKENSKKKQVLYAMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTSY 540
MTKEFFAEYLKKENSKKKQVLYAMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTSY
Sbjct: 481 MTKEFFAEYLKKENSKKKQVLYAMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTSY 540
Query: 541 AMKLRKPMIYGSTSHVERTRILHQFKNSSDVNTIFLSKVQ 580
AMKLRKPMIYGSTSHVERTRILHQFKNSSDVNTIFLSKVQ
Sbjct: 541 AMKLRKPMIYGSTSHVERTRILHQFKNSSDVNTIFLSKVQ 580
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,060,500
Number of extensions: 777854
Number of successful extensions: 1712
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1711
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 474
Effective length of database: 11,501,117
Effective search space: 5451529458
Effective search space used: 5451529458
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)