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Os01g0685500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : ATP-dependent DNA ligase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.57 (0.0173) R2 : 0.187
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.373 (0.0364) R2dN8 : 0.242 R2N8 : 0.187
σ : 0.326
deviance : 48.76
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
36.58 0.284 8.6 -0.446 0.165 0.524 -0.262 0.361 0.216 19.3 21.5 1501 -- --
36.77 0.282 8.61 -0.536 0.163 0.486 -0.289 -- 0.194 19.2 21.7 1519 -- --
36.71 0.282 8.6 -0.439 0.159 0.515 -- 0.36 0.207 19.6 21.8 1511 -- --
36.93 0.283 8.61 -0.533 0.162 0.489 -- -- 0.187 19.6 21.7 1519 -- --
38.16 0.288 8.6 -0.436 -- 0.503 -- 0.32 0.211 -- 21.8 1519 -- --
44.32 0.312 8.58 -0.334 0.162 -- -0.239 -- 0.34 19.6 -- -- -- --
44.47 0.312 8.58 -0.329 0.161 -- -- -- 0.339 19.9 -- -- -- --
38.38 0.289 8.61 -0.53 -- 0.488 -- -- 0.188 -- 21.7 1527 -- --
42.79 0.305 8.59 -- 0.168 0.321 -- -- 0.275 19.3 22.5 1344 -- --
45.88 0.317 8.58 -0.33 -- -- -- -- 0.337 -- -- -- -- --
47.31 0.322 8.57 -- 0.164 -- -- -- 0.375 19.8 -- -- -- --
43.57 0.307 8.59 -- -- 0.317 -- -- 0.276 -- 22.38 734 -- --
48.76 0.326 8.57 -- -- -- -- -- 0.373 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.30 precipitation 0.1 14400 < th dose independent rect. 7 1
2 36.30 precipitation 0.1 14400 < th dose dependent rect. 7 1
3 36.34 precipitation 0.1 14400 > th dose independent rect. 7 1
4 36.34 precipitation 0.1 14400 > th dose dependent rect. 7 1
5 36.41 temperature 25.0 1440 < th dose dependent rect. 17 1
6 36.48 precipitation 0.1 14400 > th dose independent rect. 17 1
8 36.82 temperature 25.0 1440 < th dose dependent rect. 16 6
17 36.93 precipitation 0.1 14400 < th dose independent rect. 17 1
18 36.93 precipitation 0.1 14400 < th dose dependent rect. 17 1
19 36.95 precipitation 0.1 14400 > th dose dependent rect. 17 1
20 36.95 temperature 25.0 1440 < th dose dependent rect. 11 11
28 36.98 temperature 25.0 1440 < th dose dependent rect. 10 16
29 36.99 temperature 25.0 1440 < th dose dependent sin 18 NA
42 37.04 temperature 25.0 720 < th dose dependent rect. 5 16
46 37.05 temperature 25.0 1440 < th dose dependent rect. 13 13
92 37.20 temperature 25.0 720 < th dose dependent sin 23 NA
151 37.42 precipitation 0.1 14400 < th dose independent rect. 4 4
152 37.42 precipitation 0.1 14400 < th dose dependent rect. 4 4
154 37.43 precipitation 0.1 14400 > th dose independent rect. 4 4
159 37.45 precipitation 0.1 14400 > th dose dependent rect. 4 4
186 37.54 temperature 25.0 1440 < th dose dependent rect. 24 22
192 37.55 temperature 30.0 270 < th dose dependent rect. 22 21
193 37.56 wind 9.0 14400 < th dose independent rect. 6 7
211 37.59 temperature 25.0 1440 < th dose dependent no NA NA
225 37.61 temperature 25.0 1440 < th dose dependent rect. 13 23
230 37.62 temperature 25.0 1440 < th dose dependent rect. 15 23
231 37.62 temperature 25.0 1440 < th dose dependent rect. 20 23
257 37.66 humidity 80.0 14400 > th dose dependent rect. 13 1
273 37.68 precipitation 0.1 14400 > th dose dependent rect. 4 6
294 37.70 wind 9.0 14400 < th dose independent rect. 9 4
302 37.72 wind 3.0 14400 < th dose independent rect. 22 4
347 37.81 precipitation 0.1 14400 > th dose independent rect. 4 6
348 37.81 wind 3.0 43200 < th dose dependent rect. 5 1
352 37.82 precipitation 0.1 14400 < th dose independent rect. 4 6
354 37.82 precipitation 0.1 14400 < th dose dependent rect. 4 6
369 37.85 wind 9.0 14400 > th dose dependent rect. 10 3
376 37.87 precipitation 0.1 14400 < th dose independent rect. 4 12
377 37.87 precipitation 0.1 14400 < th dose dependent rect. 4 12
384 37.89 wind 3.0 14400 < th dose independent rect. 1 1
385 37.89 wind 3.0 14400 > th dose independent rect. 22 4
386 37.89 precipitation 0.1 14400 > th dose independent rect. 4 12
395 37.91 precipitation 0.1 14400 < th dose independent rect. 4 10
399 37.91 precipitation 0.1 14400 > th dose dependent rect. 4 10
400 37.91 precipitation 0.1 14400 < th dose dependent rect. 4 10
406 37.92 precipitation 0.1 14400 > th dose independent rect. 4 10
414 37.93 wind 1.0 14400 > th dose dependent rect. 1 1
418 37.94 temperature 25.0 10 < th dose dependent sin 22 NA
419 37.94 temperature 25.0 1440 < th dose dependent rect. 1 1
427 37.96 wind 9.0 14400 > th dose dependent rect. 6 7
440 37.98 wind 3.0 14400 < th dose independent rect. 22 2
442 37.98 radiation 1.0 4320 < th dose dependent rect. 7 2
448 37.98 temperature 30.0 10 < th dose dependent rect. 19 23
455 38.00 wind 3.0 14400 < th dose dependent rect. 23 1
474 38.03 wind 1.0 14400 > th dose dependent rect. 22 4
511 38.10 wind 3.0 14400 > th dose independent rect. 1 1
562 38.16 temperature 30.0 10 < th dose dependent rect. 10 23
564 38.17 wind 1.0 14400 > th dose dependent rect. 23 1
584 38.19 wind 9.0 14400 > th dose independent rect. 9 2
607 38.22 temperature 10.0 1440 > th dose dependent rect. 1 1
636 38.26 radiation 1.0 4320 > th dose independent rect. 7 3
637 38.26 radiation 1.0 4320 < th dose independent rect. 7 3
653 38.27 temperature 30.0 10 < th dose dependent rect. 1 23
655 38.27 temperature 30.0 10 < th dose dependent rect. 15 23
656 38.28 radiation 1.0 4320 > th dose independent rect. 7 6
657 38.28 radiation 1.0 4320 < th dose independent rect. 7 6
659 38.28 radiation 1.0 4320 > th dose independent rect. 7 8
660 38.28 radiation 1.0 4320 < th dose independent rect. 7 8
672 38.28 temperature 15.0 90 > th dose dependent rect. 17 23
676 38.29 temperature 30.0 10 < th dose dependent no NA NA
682 38.30 wind 9.0 14400 > th dose independent rect. 7 6
702 38.31 temperature 30.0 90 < th dose dependent rect. 10 23
730 38.35 humidity 90.0 14400 > th dose independent rect. 13 1
739 38.35 wind 3.0 43200 < th dose dependent rect. 22 8
757 38.37 humidity 80.0 43200 < th dose independent rect. 6 1
765 38.37 wind 5.0 14400 < th dose dependent rect. 22 4
770 38.37 temperature 10.0 1440 > th dose dependent rect. 21 6
776 38.37 temperature 30.0 10 < th dose dependent rect. 13 23
785 38.38 wind 9.0 14400 < th dose dependent rect. 22 4
850 38.43 wind 9.0 14400 < th dose dependent rect. 23 1
851 38.43 humidity 90.0 4320 > th dose dependent rect. 8 1
906 38.47 wind 5.0 43200 < th dose dependent rect. 1 1
937 38.49 wind 9.0 14400 < th dose dependent rect. 1 1
982 38.53 humidity 80.0 43200 > th dose independent rect. 6 1
983 38.53 wind 1.0 43200 > th dose dependent rect. 5 1