BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0685500 Os01g0685500|AK064463
(318 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G66730.1 | chr1:24884991-24891823 FORWARD LENGTH=1397 361 e-100
AT1G08130.1 | chr1:2542913-2547815 REVERSE LENGTH=791 214 6e-56
AT1G49250.1 | chr1:18220533-18224256 FORWARD LENGTH=658 197 4e-51
AT5G57160.1 | chr5:23155150-23161688 REVERSE LENGTH=1220 53 3e-07
>AT1G66730.1 | chr1:24884991-24891823 FORWARD LENGTH=1397
Length = 1396
Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust.
Identities = 166/231 (71%), Positives = 196/231 (84%), Gaps = 1/231 (0%)
Query: 82 QEKPGHFELAQQLTVEADEASVDNSTTLERMNTFFKMACQSSCEGIMLKILDVDAGYSAS 141
+ +PG+ E A+++TV A+EAS++N TL R+N F + A QSSCEGIM+K LDV+AGY +
Sbjct: 1164 ETRPGYLEYAKEITVGAEEASLNNHDTLSRINAFLEEAFQSSCEGIMVKSLDVNAGYCPT 1223
Query: 142 KRCDSWLKVKRDYV-GLGDSLDLVPIGAWYGNGRKAGWYSPFLMACYNPEYEEFQSVCRV 200
KR DSWLKVKRDYV GLGD+LDLVPIGAWYGNGRKAGWYSPFLMAC+NPE EEFQSVCRV
Sbjct: 1224 KRSDSWLKVKRDYVDGLGDTLDLVPIGAWYGNGRKAGWYSPFLMACFNPETEEFQSVCRV 1283
Query: 201 MSGFSDEFYKEMKEFYSGDRILPKKPVYYKTDELPELWFSAEQVWEIRGADLTLSPVHHA 260
MSGFSD FY EMKEFYS D+IL KKP YY+T E P++WFSAE VWEIRGAD T+SPVH A
Sbjct: 1284 MSGFSDAFYIEMKEFYSEDKILAKKPPYYRTGETPDMWFSAEVVWEIRGADFTVSPVHSA 1343
Query: 261 AIGLVHPSRGISVRMPRYIRSRPDRSPEDCSTATDVASLFKAQTRKMEVSS 311
++GLVHPSRGISVR PR+I DR+PE+CSTATD+A +F AQTRKM ++S
Sbjct: 1344 SLGLVHPSRGISVRFPRFISKVTDRNPEECSTATDIAEMFHAQTRKMNITS 1394
>AT1G08130.1 | chr1:2542913-2547815 REVERSE LENGTH=791
Length = 790
Score = 214 bits (544), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 153/241 (63%), Gaps = 12/241 (4%)
Query: 65 LLNCSLRQRRKYIHDLFQEKPGHFELAQQLTVEADEASVDNSTTLERMNTFFKMACQSSC 124
L+ +L+ RR+ +++ F+E PG+F+ A +T S ++ + F + C
Sbjct: 546 LIQENLKIRREKLYESFEEDPGYFQFATAVT----------SNDIDEIQKFLDASVDVGC 595
Query: 125 EGIMLKILDVDAGYSASKRCDSWLKVKRDYV-GLGDSLDLVPIGAWYGNGRKAGWYSPFL 183
EG+++K LD DA Y +KR ++WLK+K+DY+ +GDS+DLVPI A++G G++ G Y FL
Sbjct: 596 EGLIIKTLDSDATYEPAKRSNNWLKLKKDYMDSIGDSVDLVPIAAFHGRGKRTGVYGAFL 655
Query: 184 MACYNPEYEEFQSVCRVMSGFSDEFYKEMKEFYSGDRILPKKPVYYKTDEL-PELWFSAE 242
+ACY+ + EEFQS+C++ +GFSD E I K Y D L P++WF
Sbjct: 656 LACYDVDKEEFQSICKIGTGFSDAMLDERSSSLRSQVIATPKQYYRVGDSLNPDVWFEPT 715
Query: 243 QVWEIRGADLTLSPVHHAAIGLVHPSRGISVRMPRYIRSRPDRSPEDCSTATDVASLFKA 302
+VWE++ ADLT+SPVH AA G+V P +GIS+R PR +R R D+ PE+ +++ +A L++A
Sbjct: 716 EVWEVKAADLTISPVHRAATGIVDPDKGISLRFPRLLRVREDKKPEEATSSEQIADLYQA 775
Query: 303 Q 303
Q
Sbjct: 776 Q 776
>AT1G49250.1 | chr1:18220533-18224256 FORWARD LENGTH=658
Length = 657
Score = 197 bits (502), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 156/244 (63%), Gaps = 18/244 (7%)
Query: 65 LLNCSLRQRRKYIHDLFQEKPGHFELAQQLTVEADEASVDNSTTLERMNTFFKMACQSSC 124
L++ +L RR+ +HD F+E G+F+ A LT S + + F K + C
Sbjct: 413 LIHENLNIRREKLHDSFEEDLGYFQFATALT----------SNDIGELQEFLKASIDIGC 462
Query: 125 EGIMLKILDVDAGYSASKRCDSWLKVKRDYV-GLGDSLDLVPIGAWYGNGRKAGWYSPFL 183
EG+M+K L +A Y +KR ++WLK+K+DY+ +GDS+DLVPI ++G G++ G++ +L
Sbjct: 463 EGLMIKSLYSNATYEPAKRSNNWLKLKKDYMDNIGDSVDLVPIATFHGRGKRTGFFGAYL 522
Query: 184 MACYNPEYEEFQSVCRVMSGFSDEFYKEMKEFYSG--DRILPKKPVYYKTDE--LPELWF 239
+ACY+ + EEFQS+C++ + FSD E+++ S +++ YY+ D P++W
Sbjct: 523 LACYDVDKEEFQSICKIGTEFSD---VELQDLSSSLCSKVIATPKQYYQVDNDLNPDVWL 579
Query: 240 SAEQVWEIRGADLTLSPVHHAAIGLVHPSRGISVRMPRYIRSRPDRSPEDCSTATDVASL 299
+VWE++ ADLT+SPV+ AIG+V P +GIS+R PR +R R D++PE+ +T+ +A +
Sbjct: 580 EPTEVWEVKAADLTVSPVYREAIGIVDPDKGISLRFPRLVRIRKDKNPEEATTSDQIAEM 639
Query: 300 FKAQ 303
++AQ
Sbjct: 640 YQAQ 643
>AT5G57160.1 | chr5:23155150-23161688 REVERSE LENGTH=1220
Length = 1219
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 140/316 (44%), Gaps = 42/316 (13%)
Query: 28 SNYTLLAWCKNVLHAYQYELFVEFIYNIRKLTVFFCSLLNCSLRQRRKYIHDLFQEKPGH 87
SN + + L +++ +V F L V S+++ SL++R + + + + G
Sbjct: 319 SNQEIAKAAREGLDSHKQLCYVAFDV----LYVGDTSVIHQSLKERHELLKKVVKPLKGR 374
Query: 88 FEL-----AQQLTVEADEAS----VDNSTTLERMNTFFKMACQSSCEGIMLKILDVDAGY 138
E+ + + E S V + +ER FFK ++ EGI+LK D+++ +
Sbjct: 375 LEVLVPEGGLNVHRPSGEPSWSIVVHAAADVER---FFKETVENRDEGIVLK--DLESKW 429
Query: 139 SASKRCDSWLKVKRDYVGLGDSLDLVPIGAWYGNGRKAGWYSPFLMAC-----YNPEYEE 193
R W+K+K +Y+ G LD++ IG +YG+GR+ G + FL+A N
Sbjct: 430 EPGDRSGKWMKLKPEYIRAGADLDVLIIGGYYGSGRRGGEVAQFLVALADRAEANVYPRR 489
Query: 194 FQSVCRVMSGFSDE----FYKEMKEFYSGDRILPKK--PVYYK----TDELPELWFSAEQ 243
F S CRV +G SD+ ++K ++ + PKK P +Y+ + E P++W + +
Sbjct: 490 FMSFCRVGTGLSDDELNTVVSKLKPYFRKNE-HPKKAPPSFYQVTNHSKERPDVWIDSPE 548
Query: 244 VWEIRGADLTLSPVHHAAIGLVHPSRGISVRMPRYIRSRPDRSPEDCSTATDVASLFKAQ 303
I + + V P S+R PR + R D+ +C L +
Sbjct: 549 KSIILSITSDIRTIRSEV--FVAP---YSLRFPRIDKVRYDKPWHECLDVQAFVELVNSS 603
Query: 304 ---TRKMEVSSDGQDT 316
T+K + S QD
Sbjct: 604 NGTTQKQKESESTQDN 619
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.136 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,339,662
Number of extensions: 317720
Number of successful extensions: 723
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 714
Number of HSP's successfully gapped: 4
Length of query: 318
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 219
Effective length of database: 8,392,385
Effective search space: 1837932315
Effective search space used: 1837932315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)