BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0685500 Os01g0685500|AK064463
(318 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0685500 ATP-dependent DNA ligase family protein 667 0.0
AK110056 175 3e-44
Os10g0489200 Similar to DNA ligase (EC 6.5.1.1) (Polydeoxyr... 139 3e-33
>Os01g0685500 ATP-dependent DNA ligase family protein
Length = 318
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/318 (100%), Positives = 318/318 (100%)
Query: 1 LRKLISCWSKVIYTLFGNRKRPLLSCKSNYTLLAWCKNVLHAYQYELFVEFIYNIRKLTV 60
LRKLISCWSKVIYTLFGNRKRPLLSCKSNYTLLAWCKNVLHAYQYELFVEFIYNIRKLTV
Sbjct: 1 LRKLISCWSKVIYTLFGNRKRPLLSCKSNYTLLAWCKNVLHAYQYELFVEFIYNIRKLTV 60
Query: 61 FFCSLLNCSLRQRRKYIHDLFQEKPGHFELAQQLTVEADEASVDNSTTLERMNTFFKMAC 120
FFCSLLNCSLRQRRKYIHDLFQEKPGHFELAQQLTVEADEASVDNSTTLERMNTFFKMAC
Sbjct: 61 FFCSLLNCSLRQRRKYIHDLFQEKPGHFELAQQLTVEADEASVDNSTTLERMNTFFKMAC 120
Query: 121 QSSCEGIMLKILDVDAGYSASKRCDSWLKVKRDYVGLGDSLDLVPIGAWYGNGRKAGWYS 180
QSSCEGIMLKILDVDAGYSASKRCDSWLKVKRDYVGLGDSLDLVPIGAWYGNGRKAGWYS
Sbjct: 121 QSSCEGIMLKILDVDAGYSASKRCDSWLKVKRDYVGLGDSLDLVPIGAWYGNGRKAGWYS 180
Query: 181 PFLMACYNPEYEEFQSVCRVMSGFSDEFYKEMKEFYSGDRILPKKPVYYKTDELPELWFS 240
PFLMACYNPEYEEFQSVCRVMSGFSDEFYKEMKEFYSGDRILPKKPVYYKTDELPELWFS
Sbjct: 181 PFLMACYNPEYEEFQSVCRVMSGFSDEFYKEMKEFYSGDRILPKKPVYYKTDELPELWFS 240
Query: 241 AEQVWEIRGADLTLSPVHHAAIGLVHPSRGISVRMPRYIRSRPDRSPEDCSTATDVASLF 300
AEQVWEIRGADLTLSPVHHAAIGLVHPSRGISVRMPRYIRSRPDRSPEDCSTATDVASLF
Sbjct: 241 AEQVWEIRGADLTLSPVHHAAIGLVHPSRGISVRMPRYIRSRPDRSPEDCSTATDVASLF 300
Query: 301 KAQTRKMEVSSDGQDTSH 318
KAQTRKMEVSSDGQDTSH
Sbjct: 301 KAQTRKMEVSSDGQDTSH 318
>AK110056
Length = 1022
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/179 (48%), Positives = 118/179 (65%), Gaps = 11/179 (6%)
Query: 138 YSASKRCDSWLKVKRDYV-GLGDSLDLVPIGAWYGNGRKAGWYSPFLMACYNPEYEEFQS 196
Y KRC+SWLKVK+DYV GLGDSLD+VPIGAW+G GRKA W+SP L+A Y P Q+
Sbjct: 816 YEPDKRCESWLKVKKDYVDGLGDSLDVVPIGAWHGMGRKATWWSPMLLALYEPGTGVLQA 875
Query: 197 VCRVMSGFSDEFYKEMKEFYSGD-------RILPKKPVYYKTDE---LPELWFSAEQVWE 246
VC+ +SGF+D FYKE+ Y+ R P Y+ D P++W+ +VWE
Sbjct: 876 VCKCISGFTDAFYKELNVRYAEGSESCVRARYGEPPPFGYEVDTGNLFPDVWWRPSEVWE 935
Query: 247 IRGADLTLSPVHHAAIGLVHPSRGISVRMPRYIRSRPDRSPEDCSTATDVASLFKAQTR 305
IRGAD+T+SP + AAIGLV+ RG+S+R PR++R R D++ E ST +A ++ Q +
Sbjct: 936 IRGADVTVSPNYTAAIGLVNEERGLSIRFPRFMRRREDKTVEQASTPAMLAKMYFEQQK 994
>Os10g0489200 Similar to DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide
synthase [ATP])
Length = 828
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 99/148 (66%), Gaps = 11/148 (7%)
Query: 65 LLNCSLRQRRKYIHDLFQEKPGHFELAQQLTVEADEASVDNSTTLERMNTFFKMACQSSC 124
LL L+ RR+++++ F+E PG F+LA +T S LE + F A SSC
Sbjct: 671 LLQEQLKVRREHLYNSFEEVPGVFQLATSIT----------SNDLEEIQKFLDTAVNSSC 720
Query: 125 EGIMLKILDVDAGYSASKRCDSWLKVKRDYV-GLGDSLDLVPIGAWYGNGRKAGWYSPFL 183
EG+++K LD DA Y +KR ++WLK+K+DY+ +GDSLDLVPI A++G G++ G Y FL
Sbjct: 721 EGLIIKTLDKDATYEPAKRSNNWLKLKKDYMDSIGDSLDLVPIAAFHGRGKRTGVYGSFL 780
Query: 184 MACYNPEYEEFQSVCRVMSGFSDEFYKE 211
+ACY+ + EE+Q++C + +GFS++ +E
Sbjct: 781 LACYDEQNEEYQTICNIGTGFSEQQLEE 808
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,264,133
Number of extensions: 478336
Number of successful extensions: 832
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 828
Number of HSP's successfully gapped: 3
Length of query: 318
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 217
Effective length of database: 11,762,187
Effective search space: 2552394579
Effective search space used: 2552394579
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)