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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0685200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Anti-silencing protein, ASF1-like family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.42 (0.0289) R2 : 0.267
β1 : -0.0497 (0.106) R2dD : 0.000433 R2D : 0.000396
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.26 (0.24) R2dE : 0.143 R2E : 0.128
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.15 (0.888) R2dD*E : 0.136 R2D*E : 0.123
γ1 : 0.0629 (0.0618) R2dN8 : 0.00249 R2N8 : -0.000288
σ : 0.54
deviance : 134.55
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 78.58
memory length : 16
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.9
open length of G : 2.18

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
132.81 0.541 3.42 -0.0621 0.178 2.1 -0.502 -7.9 0.0575 5.32 78.91 11 5.92 2.25
155.06 0.58 3.42 -0.0358 0.171 2.13 -0.913 -- 0.0498 5.26 78.85 16 6.26 2.37
132.93 0.537 3.41 -0.0573 0.179 2.18 -- -8.15 0.0617 5.83 78.56 16 5.92 2.18
157.21 0.584 3.42 -0.0703 0.181 2.15 -- -- 0.0471 5.79 78.72 16 6.38 2.22
134.55 0.54 3.42 -0.0497 -- 2.26 -- -8.15 0.0629 -- 78.58 16 5.9 2.18
177.25 0.624 3.42 -0.0725 0.278 -- -0.972 -- 0.00835 6.08 -- -- -- --
179.52 0.627 3.42 -0.081 0.275 -- -- -- 0.0123 6.45 -- -- -- --
158.87 0.587 3.42 -0.0643 -- 2.23 -- -- 0.0526 -- 78.52 16 6.3 2.28
157.34 0.584 3.41 -- 0.179 2.15 -- -- 0.055 5.81 78.66 16 6.37 2.23
183.44 0.633 3.43 -0.074 -- -- -- -- 0.0181 -- -- -- -- --
179.7 0.627 3.42 -- 0.273 -- -- -- 0.0213 6.47 -- -- -- --
158.98 0.587 3.42 -- -- 2.23 -- -- 0.0598 -- 78.65 16 6.3 2.28
183.59 0.632 3.42 -- -- -- -- -- 0.0263 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 134.44 humidity 80 10 < th dose independent rect. 6 2
3 135.07 humidity 80 10 < th dose independent rect. 23 9
11 136.36 humidity 80 90 < th dose independent rect. 2 6
14 136.56 humidity 80 90 < th dose independent rect. 7 1
15 137.13 radiation 10 30 > th dose independent rect. 7 1
29 139.11 humidity 90 10 < th dose dependent rect. 7 1
30 139.41 humidity 70 90 < th dose independent rect. 19 12
33 140.05 humidity 70 90 < th dose dependent rect. 19 12
38 140.65 humidity 80 10 < th dose dependent rect. 23 9
45 140.97 humidity 80 10 < th dose dependent rect. 20 12
61 142.46 radiation 10 10 > th dose dependent rect. 16 16
75 142.55 wind 7 10 > th dose dependent rect. 2 9
101 142.73 wind 7 10 > th dose dependent rect. 9 2
108 142.77 radiation 10 10 > th dose dependent rect. 7 1
143 143.24 humidity 60 10 < th dose independent rect. 10 1
145 143.24 wind 9 30 > th dose independent rect. 1 10
149 143.24 humidity 60 10 < th dose dependent rect. 10 1
159 143.27 wind 5 10 > th dose independent rect. 10 1
689 145.65 atmosphere 1005 30 > th dose dependent rect. 7 1