BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0685200 Os01g0685200|J053058F10
         (120 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G66740.1  | chr1:24892586-24893548 FORWARD LENGTH=197          154   1e-38
AT5G38110.1  | chr5:15208643-15210064 FORWARD LENGTH=219          150   2e-37

>AT1G66740.1 | chr1:24892586-24893548 FORWARD LENGTH=197
          Length = 196

 Score =  154 bits (389), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 71/86 (82%), Positives = 80/86 (93%)

Query: 3   HFRFQADPPDPSKIRKEDIIGVIVLLLTCSYMGQEFIRVGYYVNNDNDDEQLREEPPAKL 62
            F FQADPPDPSKI++EDIIGV VLLLTCSYMGQEF+RVGYYVNND +DEQL+EEPP K+
Sbjct: 71  RFVFQADPPDPSKIQEEDIIGVTVLLLTCSYMGQEFLRVGYYVNNDYEDEQLKEEPPTKV 130

Query: 63  LIDRVQRNILADKPSVTKFPINFHPE 88
           LID+VQRNIL+DKP VTKFPI+FHPE
Sbjct: 131 LIDKVQRNILSDKPRVTKFPIDFHPE 156



>AT5G38110.1 | chr5:15208643-15210064 FORWARD LENGTH=219
          Length = 218

 Score =  150 bits (379), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/86 (83%), Positives = 75/86 (87%)

Query: 3   HFRFQADPPDPSKIRKEDIIGVIVLLLTCSYMGQEFIRVGYYVNNDNDDEQLREEPPAKL 62
            F  QAD PDP KIR+EDIIGV VLLLTCSYM QEFIRVGYYVNND DDEQLREEPP K+
Sbjct: 71  RFVLQADSPDPLKIREEDIIGVTVLLLTCSYMDQEFIRVGYYVNNDYDDEQLREEPPTKV 130

Query: 63  LIDRVQRNILADKPSVTKFPINFHPE 88
           LID+VQRNIL DKP VTKFPINFHPE
Sbjct: 131 LIDKVQRNILTDKPRVTKFPINFHPE 156



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,812,641
Number of extensions: 102227
Number of successful extensions: 231
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 2
Length of query: 120
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 34
Effective length of database: 8,748,793
Effective search space: 297458962
Effective search space used: 297458962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 105 (45.1 bits)