Os01g0678500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Two-pore calcium channel.
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Os01g0678500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Two-pore calcium channel.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.78 | 0.345 | 10.7 | -1.42 | 0.579 | 0.835 | 0.239 | 2.14 | -0.169 | 0.0283 | 8.9 | 4676 | -- | -- |
| 55.81 | 0.348 | 10.6 | -1.57 | 0.625 | 0.523 | 0.154 | -- | -0.131 | 23.9 | 9.076 | 4696 | -- | -- |
| 54.02 | 0.342 | 10.7 | -1.43 | 0.577 | 0.835 | -- | 2.12 | -0.169 | 0.017 | 8.9 | 4675 | -- | -- |
| 55.62 | 0.347 | 10.6 | -1.57 | 0.559 | 0.483 | -- | -- | -0.125 | 24 | 9 | 4728 | -- | -- |
| 73.29 | 0.399 | 10.7 | -1.38 | -- | 0.859 | -- | 2.29 | -0.186 | -- | 8.8 | 4994 | -- | -- |
| 61.32 | 0.367 | 10.6 | -1.72 | 0.502 | -- | 0.223 | -- | -0.0587 | 23.7 | -- | -- | -- | -- |
| 61.53 | 0.367 | 10.6 | -1.73 | 0.501 | -- | -- | -- | -0.0596 | 23.6 | -- | -- | -- | -- |
| 73.72 | 0.4 | 10.6 | -1.6 | -- | 0.38 | -- | -- | -0.136 | -- | 9.3 | 4998 | -- | -- |
| 83.56 | 0.426 | 10.5 | -- | 0.521 | 1.22 | -- | -- | 0.397 | 23.7 | 7.47 | 47520 | -- | -- |
| 77.33 | 0.411 | 10.6 | -1.71 | -- | -- | -- | -- | -0.0537 | -- | -- | -- | -- | -- |
| 140 | 0.553 | 10.5 | -- | 0.482 | -- | -- | -- | 0.133 | 23.4 | -- | -- | -- | -- |
| 94.8 | 0.453 | 10.5 | -- | -- | 1.35 | -- | -- | 0.298 | -- | 7.4 | 34008 | -- | -- |
| 154.58 | 0.58 | 10.5 | -- | -- | -- | -- | -- | 0.136 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.08 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 2 |
| 2 | 49.44 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 6 |
| 4 | 49.79 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 7 | 49.94 | temperature | 20 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 8 | 49.95 | temperature | 20 | 720 | < th | dose dependent | rect. | 2 | 4 |
| 18 | 50.35 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 6 |
| 54 | 51.19 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 5 |
| 66 | 51.30 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 1 |
| 142 | 52.11 | temperature | 20 | 720 | > th | dose independent | sin | 5 | NA |
| 148 | 52.13 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 248 | 52.81 | humidity | 60 | 90 | > th | dose independent | rect. | 5 | 14 |
| 258 | 52.86 | temperature | 20 | 720 | < th | dose dependent | sin | 8 | NA |
| 260 | 52.86 | temperature | 25 | 720 | < th | dose dependent | sin | 6 | NA |
| 264 | 52.87 | humidity | 60 | 10 | > th | dose independent | rect. | 5 | 15 |
| 282 | 52.93 | humidity | 50 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 348 | 53.26 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 5 |
| 363 | 53.34 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 2 |
| 377 | 53.40 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 3 | 16 |
| 497 | 53.87 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 612 | 54.23 | humidity | 60 | 10 | > th | dose independent | rect. | 5 | 17 |
| 636 | 54.31 | temperature | 15 | 720 | > th | dose dependent | sin | 6 | NA |
| 666 | 54.39 | temperature | 20 | 10 | > th | dose independent | rect. | 5 | 15 |
| 702 | 54.47 | humidity | 90 | 30 | < th | dose dependent | rect. | 9 | 7 |
| 707 | 54.49 | humidity | 70 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 730 | 54.53 | humidity | 70 | 10 | < th | dose dependent | rect. | 19 | 21 |
| 742 | 54.54 | humidity | 50 | 10 | > th | dose dependent | rect. | 5 | 17 |
| 747 | 54.55 | humidity | 90 | 30 | < th | dose dependent | rect. | 7 | 9 |
| 841 | 54.72 | radiation | 20 | 90 | < th | dose independent | rect. | 5 | 14 |
| 853 | 54.73 | humidity | 50 | 10 | > th | dose dependent | rect. | 5 | 10 |
| 855 | 54.73 | temperature | 10 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 876 | 54.77 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 893 | 54.81 | atmosphere | 1010 | 270 | > th | dose independent | rect. | 9 | 1 |
| 908 | 54.83 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 2 |
| 935 | 54.86 | radiation | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 955 | 54.89 | temperature | 10 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 961 | 54.91 | humidity | 70 | 10 | < th | dose dependent | sin | 1 | NA |
| 967 | 54.92 | humidity | 80 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 983 | 54.94 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 2 | 8 |
| 1000 | 54.96 | humidity | 70 | 270 | < th | dose dependent | rect. | 11 | 2 |