BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0678500 Os01g0678500|AB100696
         (757 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0678500  Similar to Two-pore calcium channel                1308   0.0  

>Os01g0678500 Similar to Two-pore calcium channel
          Length = 757

 Score = 1308 bits (3386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 662/757 (87%), Positives = 662/757 (87%)

Query: 1   MRERGEMREAKAPLIAEAAEHIXXXXXXXXXXXXXXXXXXXXXWRGSRQYQRRSDALAYG 60
           MRERGEMREAKAPLIAEAAEHI                     WRGSRQYQRRSDALAYG
Sbjct: 1   MRERGEMREAKAPLIAEAAEHISHSHGSGSSGTGSHTSGGGGGWRGSRQYQRRSDALAYG 60

Query: 61  NRYQKAAALVDLAEDGVGIPEDVLNDTRFERAMRFYFVYLRLDXXXXXXXXXXXXXXXXE 120
           NRYQKAAALVDLAEDGVGIPEDVLNDTRFERAMRFYFVYLRLD                E
Sbjct: 61  NRYQKAAALVDLAEDGVGIPEDVLNDTRFERAMRFYFVYLRLDWLWSLNLFALILLNFLE 120

Query: 121 KPLWCRGYSQHACDQRDLYFLGQLPYLSKTESLIYEGLTLVILVMDIFYPLSYEGLNLFW 180
           KPLWCRGYSQHACDQRDLYFLGQLPYLSKTESLIYEGLTLVILVMDIFYPLSYEGLNLFW
Sbjct: 121 KPLWCRGYSQHACDQRDLYFLGQLPYLSKTESLIYEGLTLVILVMDIFYPLSYEGLNLFW 180

Query: 181 KNTINKLKVLLLFILACDILVFAFSPQPFRVAPYIRVAFLIMNIRELRMCAVTLVGMVGT 240
           KNTINKLKVLLLFILACDILVFAFSPQPFRVAPYIRVAFLIMNIRELRMCAVTLVGMVGT
Sbjct: 181 KNTINKLKVLLLFILACDILVFAFSPQPFRVAPYIRVAFLIMNIRELRMCAVTLVGMVGT 240

Query: 241 YLNVXXXXXXXXXXXXXXXYVTFEDTPQGKTVFSSYGTTLYQMFILFTTSNNPDVWVPAY 300
           YLNV               YVTFEDTPQGKTVFSSYGTTLYQMFILFTTSNNPDVWVPAY
Sbjct: 241 YLNVLALSLLFLLFASWLAYVTFEDTPQGKTVFSSYGTTLYQMFILFTTSNNPDVWVPAY 300

Query: 301 KSSRWSSLFFIVYVLLGVYFLTNLILAVIYDSFKEQLAKQVSQADCTRKSILEKAFGIID 360
           KSSRWSSLFFIVYVLLGVYFLTNLILAVIYDSFKEQLAKQVSQADCTRKSILEKAFGIID
Sbjct: 301 KSSRWSSLFFIVYVLLGVYFLTNLILAVIYDSFKEQLAKQVSQADCTRKSILEKAFGIID 360

Query: 361 ATGQGYLNKEQCLSLLDELNKYRSLPKTSREDFELIFAELDQSGDFKVTSEEFATLCNTI 420
           ATGQGYLNKEQCLSLLDELNKYRSLPKTSREDFELIFAELDQSGDFKVTSEEFATLCNTI
Sbjct: 361 ATGQGYLNKEQCLSLLDELNKYRSLPKTSREDFELIFAELDQSGDFKVTSEEFATLCNTI 420

Query: 421 AIKFQKEPPPSYLEKYPSFYHSALCEWLKSFVRSPLFEYIVIFVLLMNLVAVIIETTLDI 480
           AIKFQKEPPPSYLEKYPSFYHSALCEWLKSFVRSPLFEYIVIFVLLMNLVAVIIETTLDI
Sbjct: 421 AIKFQKEPPPSYLEKYPSFYHSALCEWLKSFVRSPLFEYIVIFVLLMNLVAVIIETTLDI 480

Query: 481 ENSSSQKVWQEVEFVFGWIYVIEMALKIFSLGFGAYWMEGQNKFDFVLTWTIFIGETLTF 540
           ENSSSQKVWQEVEFVFGWIYVIEMALKIFSLGFGAYWMEGQNKFDFVLTWTIFIGETLTF
Sbjct: 481 ENSSSQKVWQEVEFVFGWIYVIEMALKIFSLGFGAYWMEGQNKFDFVLTWTIFIGETLTF 540

Query: 541 AFPSKLSFLSNGEWIRYLLLGRMLRLTRILLQXXXXXXXXXXXXXLMSSLMPYLGIVFCT 600
           AFPSKLSFLSNGEWIRYLLLGRMLRLTRILLQ             LMSSLMPYLGIVFCT
Sbjct: 541 AFPSKLSFLSNGEWIRYLLLGRMLRLTRILLQVRRFRAFVATFFTLMSSLMPYLGIVFCT 600

Query: 601 LCIYCSLGLQIFGGIVYAGNPTLEETDLFSNDYLLFNFNDYPSGMVTLFNLLVMGNWQAW 660
           LCIYCSLGLQIFGGIVYAGNPTLEETDLFSNDYLLFNFNDYPSGMVTLFNLLVMGNWQAW
Sbjct: 601 LCIYCSLGLQIFGGIVYAGNPTLEETDLFSNDYLLFNFNDYPSGMVTLFNLLVMGNWQAW 660

Query: 661 MESYRQLTGSYWSLIYFXXXXXXXXXXXXXXXXXXXXEAFFAEMELEKDGEADIQDPTLE 720
           MESYRQLTGSYWSLIYF                    EAFFAEMELEKDGEADIQDPTLE
Sbjct: 661 MESYRQLTGSYWSLIYFVSFYLISVLLLLNLIVAFVLEAFFAEMELEKDGEADIQDPTLE 720

Query: 721 GXXXXXXXXXXTKGTMVDILLHHMLSNELDGSQNRDQ 757
           G          TKGTMVDILLHHMLSNELDGSQNRDQ
Sbjct: 721 GRNRRRSVRVRTKGTMVDILLHHMLSNELDGSQNRDQ 757



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.141    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,794,995
Number of extensions: 745726
Number of successful extensions: 1659
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1654
Number of HSP's successfully gapped: 1
Length of query: 757
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 649
Effective length of database: 11,396,689
Effective search space: 7396451161
Effective search space used: 7396451161
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 160 (66.2 bits)