Os01g0668300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0668300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.49 | 0.276 | 10.6 | 1.32 | 0.37 | 0.54 | 0.0106 | 1.26 | 0.281 | 19 | 20.11 | 1622 | -- | -- |
| 36.78 | 0.282 | 10.7 | 1.08 | 0.376 | 0.337 | 0.0451 | -- | 0.201 | 18.8 | 21.2 | 2530 | -- | -- |
| 34.49 | 0.274 | 10.6 | 1.32 | 0.37 | 0.54 | -- | 1.26 | 0.281 | 19 | 20.11 | 1622 | -- | -- |
| 36.76 | 0.282 | 10.7 | 1.06 | 0.379 | 0.359 | -- | -- | 0.198 | 18.8 | 20.9 | 2567 | -- | -- |
| 40.91 | 0.298 | 10.6 | 1.33 | -- | 0.502 | -- | 1.21 | 0.272 | -- | 20.83 | 2062 | -- | -- |
| 39.77 | 0.296 | 10.6 | 1.26 | 0.376 | -- | 0.0688 | -- | 0.312 | 19.1 | -- | -- | -- | -- |
| 39.78 | 0.295 | 10.6 | 1.25 | 0.377 | -- | -- | -- | 0.312 | 19.1 | -- | -- | -- | -- |
| 43.78 | 0.308 | 10.7 | 1.06 | -- | 0.378 | -- | -- | 0.204 | -- | 20.9 | 2185 | -- | -- |
| 45.92 | 0.316 | 10.7 | -- | 0.375 | 0.933 | -- | -- | -0.0535 | 18.9 | 18.6 | 47520 | -- | -- |
| 47.25 | 0.321 | 10.6 | 1.25 | -- | -- | -- | -- | 0.305 | -- | -- | -- | -- | -- |
| 81.22 | 0.422 | 10.7 | -- | 0.364 | -- | -- | -- | 0.172 | 19.3 | -- | -- | -- | -- |
| 53.31 | 0.34 | 10.7 | -- | -- | 0.93 | -- | -- | -0.0593 | -- | 18.54 | 47520 | -- | -- |
| 88.24 | 0.438 | 10.7 | -- | -- | -- | -- | -- | 0.167 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.72 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 3 | 32.88 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 5 | 32.95 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 6 | 33.00 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 8 | 33.04 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 15 | 33.15 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 21 |
| 16 | 33.27 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 17 | 33.31 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 21 | 33.38 | temperature | 20.0 | 270 | > th | dose independent | rect. | 20 | 15 |
| 23 | 33.44 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 27 | 33.48 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 28 | 33.50 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 30 | 33.53 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 7 |
| 34 | 33.54 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 14 | 9 |
| 40 | 33.56 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 43 | 33.62 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 18 |
| 50 | 33.68 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 97 | 33.94 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 19 |
| 119 | 34.06 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 19 |
| 153 | 34.21 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 21 |
| 155 | 34.22 | wind | 5.0 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 161 | 34.24 | wind | 5.0 | 4320 | > th | dose independent | rect. | 17 | 11 |
| 189 | 34.30 | temperature | 20.0 | 270 | < th | dose independent | rect. | 1 | 21 |
| 192 | 34.31 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 201 | 34.34 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 15 | 15 |
| 205 | 34.34 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 230 | 34.41 | temperature | 20.0 | 720 | > th | dose independent | sin | 22 | NA |
| 248 | 34.42 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 19 |
| 255 | 34.44 | temperature | 20.0 | 4320 | > th | dose independent | sin | 18 | NA |
| 275 | 34.45 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 305 | 34.48 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 14 | 16 |
| 314 | 34.49 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 10 | 20 |
| 331 | 34.53 | temperature | 20.0 | 1440 | > th | dose independent | sin | 15 | NA |
| 353 | 34.55 | temperature | 20.0 | 4320 | < th | dose independent | sin | 18 | NA |
| 359 | 34.56 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 360 | 34.56 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 19 |
| 361 | 34.56 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 370 | 34.57 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 379 | 34.58 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 412 | 34.60 | temperature | 20.0 | 1440 | > th | dose independent | no | NA | NA |
| 489 | 34.63 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 495 | 34.64 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 12 |
| 501 | 34.64 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 527 | 34.66 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 537 | 34.68 | temperature | 20.0 | 1440 | < th | dose independent | sin | 15 | NA |
| 550 | 34.68 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 564 | 34.69 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 19 | 15 |
| 622 | 34.73 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 626 | 34.73 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 9 |
| 642 | 34.74 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 7 |
| 657 | 34.75 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 13 | 22 |
| 662 | 34.75 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 691 | 34.77 | temperature | 20.0 | 1440 | < th | dose independent | no | NA | NA |
| 734 | 34.79 | temperature | 20.0 | 720 | < th | dose independent | sin | 22 | NA |
| 751 | 34.80 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 761 | 34.80 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 772 | 34.81 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 780 | 34.82 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 792 | 34.83 | wind | 5.0 | 4320 | > th | dose independent | sin | 12 | NA |
| 794 | 34.83 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 892 | 34.90 | wind | 5.0 | 4320 | < th | dose independent | sin | 12 | NA |
| 897 | 34.90 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 23 | 12 |
| 927 | 34.92 | wind | 5.0 | 4320 | > th | dose independent | rect. | 17 | 17 |
| 944 | 34.93 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 980 | 34.96 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 2 | 6 |