BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0668300 Os01g0668300|AK102266
         (919 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15120.1  | chr3:5088487-5095482 REVERSE LENGTH=1955           298   1e-80

>AT3G15120.1 | chr3:5088487-5095482 REVERSE LENGTH=1955
          Length = 1954

 Score =  298 bits (763), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 168/470 (35%), Positives = 250/470 (53%), Gaps = 42/470 (8%)

Query: 79   SGFRALAAGAPRSGQQHLIRCLLHGFVGHTVIHKLDLATMAQEGNGDILSGLTQILLKCL 138
            SGF+ L AG P+SGQ+HL  C+LH F+G+  + K+D AT++QEGNGD++ G+T +L+KC 
Sbjct: 1139 SGFQLLIAGGPKSGQRHLASCVLHCFIGNAEMLKIDTATISQEGNGDLVLGVTHLLIKCA 1198

Query: 139  NLGRCIIYMPRIDLWAIDKF----HEQEAEDHVLNVGTSKLGS-TATKNIKKCSEVWNSL 193
            +   C+++MPR+DLWA+        E E +D  +    S++G   A +N  + S  WN+ 
Sbjct: 1199 SKKSCVVFMPRVDLWAVKTETPLNEEVECDDDSVQENCSEMGEEKALQNGVRVSHAWNTF 1258

Query: 194  VDQMGXXXXXXXXXXXXXXXXKFQDLPSGVRHFFSTHVVDQCLASSEHTIPRFSVNVDSY 253
             +Q+                  ++ LP  ++ FF T +  +C  +    +P+F+V V   
Sbjct: 1259 FEQVETLRVSTKMMILATSGMPYKLLPPKIQQFFKTDLSKECQPTMSEAVPQFNVQVVES 1318

Query: 254  FTWDEVIDACCLRISHDLVQQHVQLLHDRAHNNHDEQKEVFVPMEISAPGEHRSSGSKEA 313
               D  ID     +    +Q  + L+H  +H +   +K+          GE    G ++A
Sbjct: 1319 SDQDIAIDLSATELLRRAIQVFLHLVHQGSHTHCGLKKKY--------KGEDLDQGCRDA 1370

Query: 314  SMLTKYPLNMDKHPSCGVSSREHPTQLGTCSAQQEPPTSNVEDKEDNTEKIDFNEKVATN 373
            +     P N   H   G  +     +L   S +  P   N+                   
Sbjct: 1371 A-----PQNNTDH-RAGEEAVVKSKRLDDGSLKVPPLPINI------------------- 1405

Query: 374  RSNRIVKDSESLAIMAFGIQILQHPQFSKLCWVTSKLREGPCTDINGPWKGWPFNSCLLQ 433
              N   K S  LA+  FG QILQ+PQF++LCWVTSKL+EGP  D++GPW+GWPFNSC+ +
Sbjct: 1406 --NVKPKSSLQLAVSTFGYQILQYPQFAELCWVTSKLKEGPSADVSGPWRGWPFNSCITR 1463

Query: 434  STTADKSL--SGGNNVLKGKEKIPSVRGLVAVGLLAYRGAYASVLEICSEVRKVLELLVG 491
               + +    S  +N +KGK+    VRGL AVGL AYRG Y S+ E+  EVRKVLELLVG
Sbjct: 1464 PCNSSEQTITSSDSNNVKGKDSTGIVRGLTAVGLSAYRGTYISLREVSFEVRKVLELLVG 1523

Query: 492  QVRTKILEKRSRYRYFHILSQVAYLDDIMSSWAYTFQRLHSENRRVKTSP 541
            ++  KI   + R RY  ILSQVAYL+D+++SW Y  +   S  +   T+P
Sbjct: 1524 RISVKINAGKDRCRYIRILSQVAYLEDLVNSWVYAMRSFESTTQTESTNP 1573



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.132    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 20,558,225
Number of extensions: 886817
Number of successful extensions: 2127
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2122
Number of HSP's successfully gapped: 1
Length of query: 919
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 811
Effective length of database: 8,145,641
Effective search space: 6606114851
Effective search space used: 6606114851
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)