BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0668300 Os01g0668300|AK102266
         (919 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0668300  Conserved hypothetical protein                     1847   0.0  

>Os01g0668300 Conserved hypothetical protein
          Length = 919

 Score = 1847 bits (4783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 889/919 (96%), Positives = 889/919 (96%)

Query: 1   MEKNNVPHTFWSSYLPSLIQQKGIAKRIASILSGYGLIAYQLGNHDSVLNHNEQHEKFDA 60
           MEKNNVPHTFWSSYLPSLIQQKGIAKRIASILSGYGLIAYQLGNHDSVLNHNEQHEKFDA
Sbjct: 1   MEKNNVPHTFWSSYLPSLIQQKGIAKRIASILSGYGLIAYQLGNHDSVLNHNEQHEKFDA 60

Query: 61  HRLNSTGSHPKGGLAHKLSGFRALAAGAPRSGQQHLIRCLLHGFVGHTVIHKLDLATMAQ 120
           HRLNSTGSHPKGGLAHKLSGFRALAAGAPRSGQQHLIRCLLHGFVGHTVIHKLDLATMAQ
Sbjct: 61  HRLNSTGSHPKGGLAHKLSGFRALAAGAPRSGQQHLIRCLLHGFVGHTVIHKLDLATMAQ 120

Query: 121 EGNGDILSGLTQILLKCLNLGRCIIYMPRIDLWAIDKFHEQEAEDHVLNVGTSKLGSTAT 180
           EGNGDILSGLTQILLKCLNLGRCIIYMPRIDLWAIDKFHEQEAEDHVLNVGTSKLGSTAT
Sbjct: 121 EGNGDILSGLTQILLKCLNLGRCIIYMPRIDLWAIDKFHEQEAEDHVLNVGTSKLGSTAT 180

Query: 181 KNIKKCSEVWNSLVDQMGXXXXXXXXXXXXXXXXKFQDLPSGVRHFFSTHVVDQCLASSE 240
           KNIKKCSEVWNSLVDQMG                KFQDLPSGVRHFFSTHVVDQCLASSE
Sbjct: 181 KNIKKCSEVWNSLVDQMGSLLASVSISVLSTSELKFQDLPSGVRHFFSTHVVDQCLASSE 240

Query: 241 HTIPRFSVNVDSYFTWDEVIDACCLRISHDLVQQHVQLLHDRAHNNHDEQKEVFVPMEIS 300
           HTIPRFSVNVDSYFTWDEVIDACCLRISHDLVQQHVQLLHDRAHNNHDEQKEVFVPMEIS
Sbjct: 241 HTIPRFSVNVDSYFTWDEVIDACCLRISHDLVQQHVQLLHDRAHNNHDEQKEVFVPMEIS 300

Query: 301 APGEHRSSGSKEASMLTKYPLNMDKHPSCGVSSREHPTQLGTCSAQQEPPTSNVEDKEDN 360
           APGEHRSSGSKEASMLTKYPLNMDKHPSCGVSSREHPTQLGTCSAQQEPPTSNVEDKEDN
Sbjct: 301 APGEHRSSGSKEASMLTKYPLNMDKHPSCGVSSREHPTQLGTCSAQQEPPTSNVEDKEDN 360

Query: 361 TEKIDFNEKVATNRSNRIVKDSESLAIMAFGIQILQHPQFSKLCWVTSKLREGPCTDING 420
           TEKIDFNEKVATNRSNRIVKDSESLAIMAFGIQILQHPQFSKLCWVTSKLREGPCTDING
Sbjct: 361 TEKIDFNEKVATNRSNRIVKDSESLAIMAFGIQILQHPQFSKLCWVTSKLREGPCTDING 420

Query: 421 PWKGWPFNSCLLQSTTADKSLSGGNNVLKGKEKIPSVRGLVAVGLLAYRGAYASVLEICS 480
           PWKGWPFNSCLLQSTTADKSLSGGNNVLKGKEKIPSVRGLVAVGLLAYRGAYASVLEICS
Sbjct: 421 PWKGWPFNSCLLQSTTADKSLSGGNNVLKGKEKIPSVRGLVAVGLLAYRGAYASVLEICS 480

Query: 481 EVRKVLELLVGQVRTKILEKRSRYRYFHILSQVAYLDDIMSSWAYTFQRLHSENRRVKTS 540
           EVRKVLELLVGQVRTKILEKRSRYRYFHILSQVAYLDDIMSSWAYTFQRLHSENRRVKTS
Sbjct: 481 EVRKVLELLVGQVRTKILEKRSRYRYFHILSQVAYLDDIMSSWAYTFQRLHSENRRVKTS 540

Query: 541 PKVTVGKSSTRECQGDSNTAEANILGAPAGCSEAQGTPGQHTDDLEVIPAHCPSEMQENS 600
           PKVTVGKSSTRECQGDSNTAEANILGAPAGCSEAQGTPGQHTDDLEVIPAHCPSEMQENS
Sbjct: 541 PKVTVGKSSTRECQGDSNTAEANILGAPAGCSEAQGTPGQHTDDLEVIPAHCPSEMQENS 600

Query: 601 VQHAPGHLEIHGIVCDLDNDNVTSISSINAVEPDLIHSASLDVHTDSLTPADAVINDGQS 660
           VQHAPGHLEIHGIVCDLDNDNVTSISSINAVEPDLIHSASLDVHTDSLTPADAVINDGQS
Sbjct: 601 VQHAPGHLEIHGIVCDLDNDNVTSISSINAVEPDLIHSASLDVHTDSLTPADAVINDGQS 660

Query: 661 CGVDNDGQMSRVINGEENHISNIERPESHTVSVADFNELQRKNXXXXXXXXXXXXXXRNM 720
           CGVDNDGQMSRVINGEENHISNIERPESHTVSVADFNELQRKN              RNM
Sbjct: 661 CGVDNDGQMSRVINGEENHISNIERPESHTVSVADFNELQRKNAVASSTSTDSAGTSRNM 720

Query: 721 VSSEARGSDNERNTDFPVDDVKLGHLVNPQSQDTMKSLSVLKPPCLYKCCPVCFNAVYKM 780
           VSSEARGSDNERNTDFPVDDVKLGHLVNPQSQDTMKSLSVLKPPCLYKCCPVCFNAVYKM
Sbjct: 721 VSSEARGSDNERNTDFPVDDVKLGHLVNPQSQDTMKSLSVLKPPCLYKCCPVCFNAVYKM 780

Query: 781 VHDILSNSVRPSLHCLAVDDMHDLLSSWSVNLLATVRKWYTSQGIVGSEENSGEGHCVCS 840
           VHDILSNSVRPSLHCLAVDDMHDLLSSWSVNLLATVRKWYTSQGIVGSEENSGEGHCVCS
Sbjct: 781 VHDILSNSVRPSLHCLAVDDMHDLLSSWSVNLLATVRKWYTSQGIVGSEENSGEGHCVCS 840

Query: 841 SDNGCVPRECTCHLESNEDAGTIKDESYYLSGQPLSFFFKDGVLIPPDITAPTTLHCSYM 900
           SDNGCVPRECTCHLESNEDAGTIKDESYYLSGQPLSFFFKDGVLIPPDITAPTTLHCSYM
Sbjct: 841 SDNGCVPRECTCHLESNEDAGTIKDESYYLSGQPLSFFFKDGVLIPPDITAPTTLHCSYM 900

Query: 901 RLCVCSIPGSISMFNRISS 919
           RLCVCSIPGSISMFNRISS
Sbjct: 901 RLCVCSIPGSISMFNRISS 919



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.132    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 31,901,831
Number of extensions: 1347825
Number of successful extensions: 2957
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2952
Number of HSP's successfully gapped: 1
Length of query: 919
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 809
Effective length of database: 11,292,261
Effective search space: 9135439149
Effective search space used: 9135439149
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)