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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0645000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to TIS11 protein (dTIS11).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0454) R2 : 0.127
β1 : 0.302 (0.167) R2dD : 0.00735 R2D : -0.0175
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.36 (0.687) R2dE : 0.611 R2E : -0.478
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 11.6 (1.55) R2dD*E : 0.56 R2D*E : -0.459
γ1 : -0.0617 (0.0937) R2dN8 : 0.00117 R2N8 : -0.0129
σ : 0.801
deviance : 295.89
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 19.77
memory length : 229
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 16.4
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
292.8 0.804 3.17 0.261 0.113 4.84 1.1 10.5 -0.0673 7.26 19.8 221 16.2 --
327.93 0.85 3.08 0.212 0.157 0.476 1.42 -- -0.0978 6.52 19.8 221 16.2 --
295.5 0.801 3.18 0.296 0.0961 5.33 -- 11.4 -0.0662 6.32 19.77 224 16.3 --
328.05 0.844 3.08 0.282 0.272 0.548 -- -- -0.0446 5.22 24.3 229 15.2 --
295.89 0.801 3.18 0.302 -- 5.36 -- 11.6 -0.0617 -- 19.77 229 16.4 --
329.46 0.851 3.08 0.153 0.162 -- 1.49 -- -0.121 6.3 -- -- -- --
334.71 0.857 3.09 0.169 0.18 -- -- -- -0.127 5.02 -- -- -- --
326.1 0.841 3.08 0.38 -- 0.462 -- -- 0.00168 -- 23.8 1412 13.9 --
326.5 0.842 3.07 -- 0.185 0.457 -- -- -0.0157 4.37 23.4 1404 11.2 --
336.4 0.857 3.09 0.175 -- -- -- -- -0.122 -- -- -- -- --
335.45 0.857 3.09 -- 0.183 -- -- -- -0.145 4.99 -- -- -- --
328.55 0.844 3.06 -- -- 0.422 -- -- 0.00564 -- 23.6 1409 11.6 --
337.21 0.857 3.09 -- -- -- -- -- -0.141 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 288.19 temperature 20 10 < th dose dependent rect. 22 1
3 294.15 temperature 20 270 < th dose independent rect. 5 17
4 294.33 temperature 20 90 < th dose independent rect. 20 1
21 297.69 temperature 20 90 < th dose dependent rect. 6 15
31 299.11 temperature 20 270 < th dose independent sin 22 NA
34 299.90 temperature 20 270 > th dose independent sin 22 NA
38 300.34 temperature 20 270 < th dose independent rect. 18 3
39 300.44 temperature 20 30 < th dose independent rect. 7 16
50 301.57 wind 5 10 > th dose dependent rect. 21 1
52 301.69 temperature 20 10 < th dose dependent rect. 6 17
55 301.81 wind 5 10 > th dose independent rect. 21 2
65 302.29 humidity 80 10 < th dose dependent rect. 22 1
83 302.71 humidity 80 720 < th dose dependent rect. 21 1
98 303.61 humidity 80 270 < th dose independent rect. 3 4
104 304.11 humidity 80 270 < th dose dependent rect. 3 4
108 304.52 humidity 80 10 < th dose independent rect. 21 1
116 304.70 radiation 1 90 < th dose dependent rect. 14 2
124 305.04 radiation 1 90 < th dose independent rect. 14 1
139 305.53 humidity 80 270 < th dose dependent rect. 4 1
141 305.56 humidity 80 270 < th dose independent rect. 4 1
146 305.81 wind 5 4320 < th dose independent rect. 20 2
151 306.20 wind 7 90 > th dose independent rect. 2 7
154 306.30 wind 5 4320 > th dose independent rect. 20 2
158 306.44 wind 7 90 > th dose dependent rect. 2 7
177 306.95 wind 7 90 > th dose independent rect. 7 2
182 306.99 wind 7 90 > th dose dependent rect. 7 2
205 307.24 temperature 20 30 < th dose independent rect. 6 13
216 307.31 wind 3 4320 > th dose dependent rect. 20 2
228 307.53 temperature 20 4320 > th dose independent rect. 21 1
252 307.79 temperature 20 30 < th dose dependent rect. 6 3
253 307.79 temperature 20 30 < th dose dependent rect. 6 6
269 307.89 humidity 90 1440 < th dose dependent rect. 3 3
277 307.98 temperature 20 270 > th dose independent rect. 5 23
278 308.00 wind 5 10 > th dose independent rect. 8 1
281 308.00 wind 5 10 > th dose dependent rect. 8 1
288 308.05 temperature 20 30 < th dose independent rect. 6 2
342 308.29 temperature 20 4320 > th dose independent rect. 20 3
352 308.39 wind 5 1440 > th dose independent rect. 9 1
367 308.54 temperature 20 4320 < th dose independent rect. 21 1
377 308.60 wind 7 720 > th dose dependent rect. 20 1
389 308.64 humidity 80 270 < th dose independent rect. 19 13
426 308.84 temperature 20 4320 < th dose independent rect. 20 3
436 308.90 temperature 20 720 > th dose independent rect. 6 16
447 308.98 wind 5 1440 < th dose independent rect. 8 2
449 309.00 wind 5 720 > th dose independent rect. 21 1
455 309.04 temperature 20 270 > th dose independent rect. 8 23
459 309.06 temperature 20 4320 > th dose independent rect. 18 5
474 309.20 temperature 20 270 > th dose independent rect. 19 23
494 309.42 temperature 20 270 < th dose independent rect. 9 23
495 309.43 temperature 20 270 > th dose independent no NA NA
496 309.43 temperature 20 270 < th dose independent rect. 17 15
532 309.76 temperature 20 4320 < th dose independent rect. 18 5
540 309.85 temperature 20 270 > th dose independent rect. 16 23
552 309.97 temperature 20 270 > th dose independent rect. 13 23
558 310.01 temperature 20 720 > th dose independent rect. 15 7
569 310.08 temperature 20 270 < th dose independent rect. 18 23
572 310.11 temperature 20 270 < th dose independent no NA NA
576 310.11 temperature 20 270 < th dose independent rect. 13 23
643 310.23 humidity 90 1440 < th dose dependent rect. 23 8
663 310.35 temperature 20 270 > th dose independent rect. 2 23
666 310.37 temperature 20 1440 > th dose independent rect. 18 1
682 310.48 wind 5 4320 > th dose dependent rect. 19 6
691 310.56 wind 3 1440 > th dose dependent rect. 8 1
719 310.75 temperature 20 30 < th dose independent sin 22 NA
739 310.89 humidity 80 1440 > th dose independent rect. 5 2
764 310.99 wind 7 90 > th dose dependent rect. 14 4
787 311.13 humidity 80 1440 > th dose independent rect. 3 4
818 311.31 humidity 80 720 < th dose dependent rect. 20 11
826 311.42 humidity 80 1440 < th dose independent rect. 5 2
859 311.64 humidity 50 1440 > th dose dependent rect. 2 4
877 311.73 temperature 20 270 > th dose independent rect. 23 23
905 311.91 humidity 80 1440 < th dose independent rect. 3 4
922 311.97 temperature 25 270 < th dose dependent rect. 3 19
931 312.01 wind 7 1440 > th dose independent rect. 1 8
937 312.03 humidity 80 720 < th dose independent rect. 21 2
947 312.08 humidity 50 1440 > th dose dependent rect. 2 1
963 312.14 temperature 20 270 < th dose dependent sin 22 NA
995 312.24 humidity 70 1440 > th dose dependent rect. 5 1