BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0645000 Os01g0645000|AK108658
         (339 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G68200.1  | chr1:25562118-25563948 FORWARD LENGTH=309          166   2e-41
AT1G66810.1  | chr1:24927613-24928619 REVERSE LENGTH=311          163   1e-40
AT1G32360.1  | chr1:11673325-11675162 FORWARD LENGTH=385           52   5e-07
AT2G35430.1  | chr2:14901014-14902257 REVERSE LENGTH=253           51   1e-06
AT3G19360.1  | chr3:6707544-6708864 FORWARD LENGTH=387             48   8e-06

>AT1G68200.1 | chr1:25562118-25563948 FORWARD LENGTH=309
          Length = 308

 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/150 (56%), Positives = 95/150 (63%), Gaps = 8/150 (5%)

Query: 189 LPKSISVRSTSYLKLNXXXXXXXXXXXXPNRKPRXXXXXXXXXXXQRAY--DGGKKGDEQ 246
           LPKSISVRS  Y K +            P                Q+ Y   GGKK D++
Sbjct: 151 LPKSISVRSNGYSKASQGGGGAAAQSGKPRGTVTKPGTCGQVSTTQKVYVRGGGKKEDQE 210

Query: 247 KAQPADSGAELEVYNQGMFKTELCNKWEETGDCPYGDQCQFAHGVTELRPVIRHPRYKTA 306
           +          EVYNQGM KTELCNKW+ETG CPYGD CQFAHG+ ELRPVIRHPRYKT 
Sbjct: 211 EEIEV------EVYNQGMTKTELCNKWQETGTCPYGDHCQFAHGIKELRPVIRHPRYKTE 264

Query: 307 VCRMVLAGDVCPYGHRCHFRHSLTPAERLL 336
           VCRMVLAGD CPYGHRCHFRHSL+  E+L+
Sbjct: 265 VCRMVLAGDNCPYGHRCHFRHSLSEQEKLV 294



>AT1G66810.1 | chr1:24927613-24928619 REVERSE LENGTH=311
          Length = 310

 Score =  163 bits (413), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 116/201 (57%), Gaps = 16/201 (7%)

Query: 137 RVTNSDLALRLALLSGKHTAAVAVADEIRRLRLGEQKVAAATKERTPEKLAVLPKSISVR 196
           R  NSDL L+L  +S   +++V+    I   +   Q   + + +R  ++   LPKSISVR
Sbjct: 121 RFENSDL-LKLIRISTSSSSSVSPPAPIHNRQFRHQISDSRSAKRNNQERNSLPKSISVR 179

Query: 197 STSYLKLNXXXXXXXXXXXXPNRKPRXXXXXXXXXXXQRAYDGGKKGDEQKAQPADSGAE 256
           S  YLK+N             +               Q+      KG+ +         E
Sbjct: 180 SQGYLKINHGFEASDLQTSQLSSNS--------VSSSQKVCVVQTKGERE-------ALE 224

Query: 257 LEVYNQGMFKTELCNKWEETGDCPYGDQCQFAHGVTELRPVIRHPRYKTAVCRMVLAGDV 316
           LEVY QGM KTELCNKW+ETG C YGD CQFAHG+ ELRPVIRHPRYKT VCRM++ G +
Sbjct: 225 LEVYRQGMMKTELCNKWQETGACCYGDNCQFAHGIDELRPVIRHPRYKTEVCRMMVTGAM 284

Query: 317 CPYGHRCHFRHSLTPAERLLL 337
           CPYGHRCHFRHSLT  ER+++
Sbjct: 285 CPYGHRCHFRHSLTDQERMMM 305



>AT1G32360.1 | chr1:11673325-11675162 FORWARD LENGTH=385
          Length = 384

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 26/38 (68%)

Query: 257 LEVYNQGMFKTELCNKWEETGDCPYGDQCQFAHGVTEL 294
           +++     +KT +CNKWE TG CP+G +C FAHG  EL
Sbjct: 253 IQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAEL 290



>AT2G35430.1 | chr2:14901014-14902257 REVERSE LENGTH=253
          Length = 252

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 23/30 (76%)

Query: 265 FKTELCNKWEETGDCPYGDQCQFAHGVTEL 294
           +KT +CNKW+ TG CP+G  C FAHG +EL
Sbjct: 144 WKTRICNKWQTTGYCPFGSHCHFAHGPSEL 173



>AT3G19360.1 | chr3:6707544-6708864 FORWARD LENGTH=387
          Length = 386

 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 18/64 (28%)

Query: 249 QPADSGAEL-EVYNQG-----------------MFKTELCNKWEETGDCPYGDQCQFAHG 290
           QP+D+ + L EV  QG                  +KT LC K++ TG CP+GD+C FAHG
Sbjct: 236 QPSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHG 295

Query: 291 VTEL 294
             EL
Sbjct: 296 QAEL 299



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,006,721
Number of extensions: 170774
Number of successful extensions: 470
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 476
Number of HSP's successfully gapped: 5
Length of query: 339
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 240
Effective length of database: 8,392,385
Effective search space: 2014172400
Effective search space used: 2014172400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)