BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0645000 Os01g0645000|AK108658
         (339 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0645000  Similar to TIS11 protein (dTIS11)                   442   e-124
Os05g0576300  Zinc finger, CCCH-type domain containing protein    223   1e-58
Os03g0301500                                                      123   2e-28

>Os01g0645000 Similar to TIS11 protein (dTIS11)
          Length = 339

 Score =  442 bits (1137), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/339 (69%), Positives = 234/339 (69%)

Query: 1   LRSALPREEALVSPVRSALELKPFNFGDQRLASSPRYLPSGDDALYRCXXXXXXXXXXXX 60
           LRSALPREEALVSPVRSALELKPFNFGDQRLASSPRYLPSGDDALYRC            
Sbjct: 1   LRSALPREEALVSPVRSALELKPFNFGDQRLASSPRYLPSGDDALYRCSSPFSPSFGFSS 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVADRYXXXXXXXX 120
                                                         EVADRY        
Sbjct: 61  PSPLATSVSLSPSSSASLVDDGDDGGAAADATGQRLQLARLALQYQEVADRYELCLSHLA 120

Query: 121 XXXXXXXXXXXXXXXXRVTNSDLALRLALLSGKHTAAVAVADEIRRLRLGEQKVAAATKE 180
                           RVTNSDLALRLALLSGKHTAAVAVADEIRRLRLGEQKVAAATKE
Sbjct: 121 EAAEEAAALRLENAELRVTNSDLALRLALLSGKHTAAVAVADEIRRLRLGEQKVAAATKE 180

Query: 181 RTPEKLAVLPKSISVRSTSYLKLNXXXXXXXXXXXXPNRKPRXXXXXXXXXXXQRAYDGG 240
           RTPEKLAVLPKSISVRSTSYLKLN            PNRKPR           QRAYDGG
Sbjct: 181 RTPEKLAVLPKSISVRSTSYLKLNQQSQAATATSAAPNRKPRTSSNPTNPPNSQRAYDGG 240

Query: 241 KKGDEQKAQPADSGAELEVYNQGMFKTELCNKWEETGDCPYGDQCQFAHGVTELRPVIRH 300
           KKGDEQKAQPADSGAELEVYNQGMFKTELCNKWEETGDCPYGDQCQFAHGVTELRPVIRH
Sbjct: 241 KKGDEQKAQPADSGAELEVYNQGMFKTELCNKWEETGDCPYGDQCQFAHGVTELRPVIRH 300

Query: 301 PRYKTAVCRMVLAGDVCPYGHRCHFRHSLTPAERLLLRS 339
           PRYKTAVCRMVLAGDVCPYGHRCHFRHSLTPAERLLLRS
Sbjct: 301 PRYKTAVCRMVLAGDVCPYGHRCHFRHSLTPAERLLLRS 339



>Os05g0576300 Zinc finger, CCCH-type domain containing protein
          Length = 343

 Score =  223 bits (569), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 116/212 (54%), Positives = 133/212 (62%), Gaps = 20/212 (9%)

Query: 137 RVTNSDLALRLALLSGKHTAAVAVADEIRRLRLGEQKVAAATKER-------------TP 183
           RV N+DLA R+A   G+ ++A+A+A ++RRLRL +++   A                  P
Sbjct: 135 RVANNDLACRIAKFGGRQSSAIALAGDLRRLRLPKEQTVPALPPPPQSPPAALMNPVAVP 194

Query: 184 EKLAVLPKSISVRSTSYLKLNXXXXXXXXXXXXPNRKPRXXXXXXXXXXXQRAYDGGKKG 243
           EK AVLPKSIS+RST Y KLN               KP              A  G  K 
Sbjct: 195 EKQAVLPKSISIRSTGYQKLNQGGKHRVS-------KPVNVGSQRVFVGIDGAEGGEHKV 247

Query: 244 DEQKAQPADSGAELEVYNQGMFKTELCNKWEETGDCPYGDQCQFAHGVTELRPVIRHPRY 303
             +K +P   G E EVYNQGMFKTELCNKWEETG CPYGDQCQFAHGV ELRPVIRHPRY
Sbjct: 248 GVKKEEPPMGGLEFEVYNQGMFKTELCNKWEETGACPYGDQCQFAHGVAELRPVIRHPRY 307

Query: 304 KTAVCRMVLAGDVCPYGHRCHFRHSLTPAERL 335
           KT VCRMVLAG VCPYGHRCHFRHS+TPA+R 
Sbjct: 308 KTQVCRMVLAGGVCPYGHRCHFRHSITPADRF 339



>Os03g0301500 
          Length = 457

 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/87 (64%), Positives = 63/87 (72%), Gaps = 2/87 (2%)

Query: 243 GDEQKAQPADSG-AELEVYNQGMFKTELCNKWEETGDCPYGDQCQFAHGVTELRPVIRHP 301
           GDE+  +    G  E+E Y QG  KTELCNKWE  G CPYG +C+FAHG+ ELRPVIRHP
Sbjct: 360 GDEEDEEDKGGGEVEVEAYRQGAAKTELCNKWER-GACPYGARCRFAHGLQELRPVIRHP 418

Query: 302 RYKTAVCRMVLAGDVCPYGHRCHFRHS 328
           RYKT  C+M  A   CPYGHRCHFRHS
Sbjct: 419 RYKTLPCQMFAAASGCPYGHRCHFRHS 445



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,320,713
Number of extensions: 297146
Number of successful extensions: 860
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 855
Number of HSP's successfully gapped: 5
Length of query: 339
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 237
Effective length of database: 11,709,973
Effective search space: 2775263601
Effective search space used: 2775263601
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)