FiT-DB / Search/ Help/ Sample detail

Os01g0600000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Copia-like retroelement pol polyprotein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0178) R2 : 0.254
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.468 (0.0376) R2dN8 : 0.328 R2N8 : 0.254
σ : 0.336
deviance : 51.85
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
37.74 0.289 10.4 -0.438 0.152 -0.588 1.47 -1.97 -0.529 6.88 10 714 -- --
39.6 0.295 10.4 -0.449 0.43 -0.294 -0.412 -- -0.518 20.6 7.221 667 -- --
39.26 0.292 10.4 -0.437 0.0771 -0.487 -- -0.468 -0.539 5.62 13.23 615 -- --
39.72 0.294 10.4 -0.442 0.0903 -0.508 -- -- -0.539 5.01 12.34 626 -- --
39.23 0.292 10.4 -0.449 -- -0.401 -- -0.575 -0.539 -- 17 579 -- --
40.97 0.3 10.4 -0.437 0.319 -- 0.235 -- -0.51 16.8 -- -- -- --
41.08 0.3 10.4 -0.437 0.323 -- -- -- -0.509 17.1 -- -- -- --
39.77 0.294 10.4 -0.451 -- -0.428 -- -- -0.542 -- 13.94 647 -- --
44.86 0.312 10.4 -- 0.0453 -0.447 -- -- -0.5 4.22 10.02 626 -- --
46.55 0.319 10.4 -0.448 -- -- -- -- -0.518 -- -- -- -- --
46.11 0.318 10.4 -- 0.331 -- -- -- -0.461 17 -- -- -- --
44.89 0.312 10.4 -- -- -0.417 -- -- -0.484 -- 10 631 -- --
51.85 0.336 10.4 -- -- -- -- -- -0.468 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.92 humidity 70.0 1440 > th dose dependent rect. 10 4
2 36.95 humidity 80.0 1440 > th dose dependent rect. 8 8
3 36.98 wind 3.0 43200 < th dose dependent rect. 4 3
9 37.02 wind 1.0 43200 > th dose dependent rect. 5 1
12 37.08 humidity 80.0 1440 > th dose independent rect. 2 14
15 37.09 humidity 80.0 1440 > th dose independent rect. 8 7
20 37.11 humidity 80.0 1440 < th dose independent rect. 8 7
22 37.12 wind 3.0 43200 < th dose independent rect. 5 1
23 37.12 wind 9.0 14400 < th dose independent rect. 7 4
25 37.12 wind 9.0 43200 < th dose dependent rect. 5 1
33 37.14 humidity 70.0 1440 > th dose dependent rect. 11 2
36 37.16 wind 3.0 43200 < th dose independent rect. 5 3
40 37.17 humidity 80.0 1440 > th dose independent rect. 10 4
44 37.18 wind 3.0 43200 > th dose independent rect. 5 1
45 37.18 humidity 80.0 1440 < th dose independent rect. 10 4
66 37.22 wind 3.0 43200 > th dose independent rect. 5 3
68 37.22 humidity 80.0 1440 < th dose independent rect. 1 15
72 37.23 humidity 80.0 1440 < th dose independent rect. 3 12
94 37.27 wind 9.0 14400 < th dose independent rect. 10 1
99 37.28 humidity 80.0 1440 > th dose independent sin 2 NA
109 37.30 humidity 70.0 1440 > th dose independent rect. 11 1
141 37.35 precipitation 0.1 720 < th dose independent rect. 3 16
146 37.35 precipitation 0.1 720 < th dose dependent rect. 3 16
147 37.36 humidity 80.0 1440 < th dose independent sin 3 NA
191 37.43 humidity 90.0 720 < th dose independent rect. 5 15
195 37.43 wind 3.0 43200 < th dose dependent rect. 1 7
206 37.45 humidity 70.0 1440 > th dose dependent sin 1 NA
209 37.45 humidity 70.0 720 > th dose dependent rect. 8 13
249 37.49 radiation 10.0 720 < th dose independent rect. 6 21
263 37.51 radiation 10.0 720 < th dose independent rect. 7 12
273 37.51 humidity 60.0 30 > th dose dependent rect. 7 23
289 37.52 humidity 60.0 720 > th dose dependent rect. 9 18
290 37.52 radiation 10.0 720 < th dose dependent rect. 5 23
325 37.56 humidity 70.0 1440 < th dose independent rect. 15 1
331 37.56 radiation 10.0 720 < th dose independent rect. 6 15
332 37.56 humidity 70.0 720 > th dose independent rect. 9 19
345 37.57 wind 1.0 43200 > th dose independent rect. 3 10
356 37.57 radiation 10.0 720 < th dose dependent rect. 6 13
387 37.59 radiation 10.0 720 < th dose dependent rect. 20 23
405 37.61 radiation 10.0 1440 < th dose independent rect. 7 4
425 37.62 humidity 70.0 1440 < th dose independent rect. 11 1
426 37.62 humidity 60.0 14400 > th dose independent rect. 15 5
457 37.63 humidity 70.0 720 > th dose dependent sin 21 NA
473 37.64 precipitation 0.1 14400 < th dose independent rect. 13 4
483 37.64 radiation 10.0 720 < th dose independent rect. 13 21
488 37.64 precipitation 0.1 14400 < th dose dependent rect. 13 4
497 37.64 radiation 10.0 720 < th dose dependent rect. 13 20
510 37.65 radiation 10.0 720 < th dose dependent rect. 23 23
512 37.66 humidity 70.0 1440 > th dose independent rect. 15 1
526 37.66 radiation 20.0 720 < th dose dependent rect. 6 15
532 37.67 precipitation 0.1 14400 > th dose independent rect. 13 4
533 37.67 humidity 60.0 14400 < th dose independent rect. 15 5
560 37.68 precipitation 0.1 14400 < th dose independent rect. 15 2
564 37.68 humidity 70.0 720 > th dose independent rect. 9 13
570 37.68 humidity 70.0 14400 < th dose dependent rect. 16 1
571 37.68 precipitation 0.1 14400 < th dose dependent rect. 15 2
583 37.69 humidity 60.0 14400 < th dose independent rect. 15 2
584 37.69 precipitation 0.1 14400 > th dose independent rect. 15 2
612 37.70 humidity 60.0 14400 > th dose independent rect. 15 1
639 37.70 radiation 10.0 720 < th dose dependent rect. 17 23
671 37.71 wind 3.0 43200 < th dose dependent rect. 1 12
676 37.71 humidity 60.0 14400 < th dose dependent rect. 15 18
679 37.71 radiation 10.0 720 < th dose dependent rect. 10 23
698 37.72 humidity 60.0 14400 < th dose dependent rect. 15 5
742 37.73 radiation 10.0 1440 < th dose independent rect. 17 18
746 37.73 precipitation 0.1 14400 > th dose dependent rect. 17 1
748 37.73 precipitation 0.1 14400 > th dose dependent rect. 13 4
794 37.74 radiation 10.0 720 < th dose dependent no NA NA
826 37.75 humidity 60.0 14400 > th dose independent sin 13 NA
827 37.75 humidity 60.0 14400 < th dose independent sin 13 NA
835 37.75 radiation 20.0 1440 < th dose dependent sin 7 NA
841 37.75 precipitation 0.1 14400 > th dose dependent rect. 11 6
862 37.76 humidity 80.0 14400 > th dose independent rect. 9 2
913 37.77 precipitation 0.1 14400 > th dose dependent rect. 15 2
938 37.78 humidity 80.0 90 < th dose independent rect. 11 23
940 37.78 humidity 70.0 14400 < th dose dependent sin 13 NA
943 37.78 radiation 20.0 1440 < th dose dependent rect. 7 3
979 37.79 humidity 90.0 14400 < th dose dependent rect. 14 2