BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0600000 Os01g0600000|AK121212
(122 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0600000 Similar to Copia-like retroelement pol polypro... 252 4e-68
Os05g0533800 ATPase, F0 complex, subunit G, mitochondrial f... 194 1e-50
Os01g0720100 172 5e-44
>Os01g0600000 Similar to Copia-like retroelement pol polyprotein
Length = 122
Score = 252 bits (644), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MASRLAQLRSKAAQASELVSKHGCAYYKEVMEKNKQHVVQPPTVEKCQELSKQLFYTRLA 60
MASRLAQLRSKAAQASELVSKHGCAYYKEVMEKNKQHVVQPPTVEKCQELSKQLFYTRLA
Sbjct: 1 MASRLAQLRSKAAQASELVSKHGCAYYKEVMEKNKQHVVQPPTVEKCQELSKQLFYTRLA 60
Query: 61 SLPGRYEAFWKEFDGVKQVWKNRKELKVEDLGIVTLFGVELYAWFCVGEIVGRGFTITGY 120
SLPGRYEAFWKEFDGVKQVWKNRKELKVEDLGIVTLFGVELYAWFCVGEIVGRGFTITGY
Sbjct: 61 SLPGRYEAFWKEFDGVKQVWKNRKELKVEDLGIVTLFGVELYAWFCVGEIVGRGFTITGY 120
Query: 121 KV 122
KV
Sbjct: 121 KV 122
>Os05g0533800 ATPase, F0 complex, subunit G, mitochondrial family protein
Length = 125
Score = 194 bits (493), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 84/122 (68%), Positives = 104/122 (85%)
Query: 1 MASRLAQLRSKAAQASELVSKHGCAYYKEVMEKNKQHVVQPPTVEKCQELSKQLFYTRLA 60
+AS+LAQ+++KA A+ +KHGCAY++ +MEKN+++V PPT+E+CQELSKQLFYTRLA
Sbjct: 4 LASKLAQMQAKACDAARFAAKHGCAYHRALMEKNQKYVADPPTIERCQELSKQLFYTRLA 63
Query: 61 SLPGRYEAFWKEFDGVKQVWKNRKELKVEDLGIVTLFGVELYAWFCVGEIVGRGFTITGY 120
SLPGRYEAFWKE D VK +W+NRK+L VE G+ LFG+ELYAWFCVGEIVGRGFT TGY
Sbjct: 64 SLPGRYEAFWKEADQVKNLWRNRKDLNVEHAGVAALFGIELYAWFCVGEIVGRGFTFTGY 123
Query: 121 KV 122
V
Sbjct: 124 HV 125
>Os01g0720100
Length = 156
Score = 172 bits (436), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 76/118 (64%), Positives = 98/118 (83%), Gaps = 2/118 (1%)
Query: 7 QLRSKAAQASELVSKHGCAYYKEVMEKNKQHVVQPPTVEKCQELSKQLFYTRLASLPGRY 66
QL+S+A +A+ +KHG A+++E+ME+NK++V+ PPT++ CQELSKQLFYTRLAS+PGRY
Sbjct: 39 QLQSRACEATRSAAKHGRAFHEELMERNKRYVIDPPTIQTCQELSKQLFYTRLASIPGRY 98
Query: 67 EAFWKEFDGVKQVWKNRK--ELKVEDLGIVTLFGVELYAWFCVGEIVGRGFTITGYKV 122
E+FWKE DG K +WKNRK LK ED+G+ TLFG+EL AWF GE+VGRGFT TGY V
Sbjct: 99 ESFWKEVDGAKLLWKNRKNLNLKAEDIGVATLFGIELIAWFAGGEVVGRGFTFTGYHV 156
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,866,333
Number of extensions: 132992
Number of successful extensions: 308
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 3
Length of query: 122
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 34
Effective length of database: 12,440,969
Effective search space: 422992946
Effective search space used: 422992946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)