BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0600000 Os01g0600000|AK121212
(122 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29480.1 | chr4:14486265-14487257 REVERSE LENGTH=123 179 2e-46
AT4G26210.1 | chr4:13282370-13283118 FORWARD LENGTH=123 177 1e-45
AT2G19680.1 | chr2:8501865-8502622 FORWARD LENGTH=123 175 5e-45
>AT4G29480.1 | chr4:14486265-14487257 REVERSE LENGTH=123
Length = 122
Score = 179 bits (455), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 80/120 (66%), Positives = 99/120 (82%)
Query: 1 MASRLAQLRSKAAQASELVSKHGCAYYKEVMEKNKQHVVQPPTVEKCQELSKQLFYTRLA 60
MAS+L Q++SKA +AS+ V+KHG +YY++++EKNKQ++ +P TVEKCQELSKQL YTRLA
Sbjct: 1 MASKLIQVQSKACEASKFVAKHGTSYYRQLLEKNKQYIQEPATVEKCQELSKQLLYTRLA 60
Query: 61 SLPGRYEAFWKEFDGVKQVWKNRKELKVEDLGIVTLFGVELYAWFCVGEIVGRGFTITGY 120
S+PGRYE FWKE D K +WKNR LKVED GI LFG+E +AW+C GEI GRGFT TGY
Sbjct: 61 SIPGRYETFWKEVDYAKNLWKNRSGLKVEDAGIAALFGLECFAWYCAGEIAGRGFTFTGY 120
>AT4G26210.1 | chr4:13282370-13283118 FORWARD LENGTH=123
Length = 122
Score = 177 bits (449), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 79/120 (65%), Positives = 99/120 (82%)
Query: 1 MASRLAQLRSKAAQASELVSKHGCAYYKEVMEKNKQHVVQPPTVEKCQELSKQLFYTRLA 60
MAS+L QL+SKA +AS+ VSKHG YYK++++KNK ++ +P T+EKC ELSKQL YTRLA
Sbjct: 1 MASKLLQLKSKACEASKFVSKHGTTYYKQLLDKNKMYIQEPATIEKCNELSKQLLYTRLA 60
Query: 61 SLPGRYEAFWKEFDGVKQVWKNRKELKVEDLGIVTLFGVELYAWFCVGEIVGRGFTITGY 120
S+PGR E+FWKE + VK +WKNR +LKVED GI LFG+E +AW+C GEIVGRGFT TGY
Sbjct: 61 SIPGRSESFWKEVNHVKGLWKNRADLKVEDAGIAALFGLECFAWYCAGEIVGRGFTFTGY 120
>AT2G19680.1 | chr2:8501865-8502622 FORWARD LENGTH=123
Length = 122
Score = 175 bits (443), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 80/120 (66%), Positives = 97/120 (80%)
Query: 1 MASRLAQLRSKAAQASELVSKHGCAYYKEVMEKNKQHVVQPPTVEKCQELSKQLFYTRLA 60
MAS+L QL+SKA QAS+ V+KHG +YYK+++E+NKQ++ +P T+EKC ELSKQL YTRLA
Sbjct: 1 MASKLVQLQSKACQASKFVAKHGNSYYKQLLEQNKQYIQEPATIEKCSELSKQLLYTRLA 60
Query: 61 SLPGRYEAFWKEFDGVKQVWKNRKELKVEDLGIVTLFGVELYAWFCVGEIVGRGFTITGY 120
S+PGRYE F KE D K + KNR LKVED GI LFG+E +AWFC GEIVGRGFT TGY
Sbjct: 61 SIPGRYETFRKEVDYAKNLLKNRANLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY 120
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,544,969
Number of extensions: 93369
Number of successful extensions: 288
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 3
Length of query: 122
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 36
Effective length of database: 8,748,793
Effective search space: 314956548
Effective search space used: 314956548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 105 (45.1 bits)