Os01g0593600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0593600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.92 | 0.348 | 6.25 | 0.0992 | 0.423 | -0.316 | -0.204 | 2.1 | -0.228 | 9.16 | 29.96 | 4350 | -- | -- |
| 61.5 | 0.365 | 6.27 | 0.132 | 0.445 | -0.356 | -0.183 | -- | -0.23 | 9.15 | 29.99 | 5078 | -- | -- |
| 55.06 | 0.346 | 6.25 | 0.0948 | 0.423 | -0.315 | -- | 2.1 | -0.228 | 9.24 | 30 | 4351 | -- | -- |
| 61.2 | 0.364 | 6.29 | 0.19 | 0.435 | -0.374 | -- | -- | -0.287 | 9.34 | 39.99 | 5639 | -- | -- |
| 65.33 | 0.376 | 6.25 | 0.0915 | -- | -0.314 | -- | 2.23 | -0.229 | -- | 30 | 4433 | -- | -- |
| 64.04 | 0.375 | 6.27 | 0.0998 | 0.427 | -- | -0.207 | -- | -0.239 | 9.19 | -- | -- | -- | -- |
| 64.19 | 0.375 | 6.27 | 0.0929 | 0.427 | -- | -- | -- | -0.239 | 9.27 | -- | -- | -- | -- |
| 66.61 | 0.38 | 6.27 | 0.366 | -- | -0.656 | -- | -- | -0.158 | -- | 68.75 | 8610 | -- | -- |
| 60.19 | 0.361 | 6.28 | -- | 0.44 | -0.419 | -- | -- | -0.285 | 9.55 | 63.82 | 8609 | -- | -- |
| 74.81 | 0.404 | 6.28 | 0.091 | -- | -- | -- | -- | -0.238 | -- | -- | -- | -- | -- |
| 64.41 | 0.375 | 6.28 | -- | 0.427 | -- | -- | -- | -0.25 | 9.26 | -- | -- | -- | -- |
| 69.77 | 0.389 | 6.27 | -- | -- | -0.431 | -- | -- | -0.184 | -- | 63.61 | 9037 | -- | -- |
| 75.03 | 0.404 | 6.29 | -- | -- | -- | -- | -- | -0.248 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.48 | temperature | 15 | 43200 | < th | dose dependent | rect. | 14 | 10 |
| 2 | 51.49 | temperature | 15 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 13 | 51.55 | temperature | 15 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 24 | 51.58 | temperature | 15 | 43200 | < th | dose dependent | sin | 19 | NA |
| 45 | 51.66 | temperature | 15 | 14400 | > th | dose independent | rect. | 9 | 6 |
| 76 | 51.82 | temperature | 15 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 77 | 51.82 | temperature | 15 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 83 | 51.84 | temperature | 15 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 98 | 51.87 | temperature | 15 | 43200 | < th | dose dependent | rect. | 5 | 15 |
| 100 | 51.88 | temperature | 15 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 109 | 51.89 | temperature | 15 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 118 | 51.90 | temperature | 15 | 43200 | < th | dose dependent | rect. | 5 | 7 |
| 150 | 51.95 | temperature | 15 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 151 | 51.95 | temperature | 15 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 207 | 52.01 | temperature | 15 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 224 | 52.03 | temperature | 15 | 14400 | < th | dose independent | rect. | 9 | 6 |
| 227 | 52.04 | temperature | 15 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 246 | 52.06 | temperature | 15 | 43200 | < th | dose dependent | no | NA | NA |
| 253 | 52.07 | temperature | 15 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 257 | 52.07 | temperature | 15 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 345 | 52.19 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 353 | 52.20 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 361 | 52.21 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 397 | 52.26 | temperature | 15 | 14400 | < th | dose independent | rect. | 10 | 16 |
| 446 | 52.34 | temperature | 15 | 43200 | < th | dose independent | rect. | 11 | 6 |
| 453 | 52.35 | temperature | 15 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 511 | 52.46 | temperature | 15 | 43200 | < th | dose independent | rect. | 11 | 11 |
| 525 | 52.48 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 543 | 52.51 | temperature | 15 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 545 | 52.51 | temperature | 15 | 43200 | < th | dose independent | rect. | 14 | 9 |
| 560 | 52.52 | temperature | 15 | 43200 | < th | dose independent | rect. | 6 | 16 |
| 574 | 52.54 | temperature | 15 | 14400 | > th | dose independent | rect. | 11 | 3 |
| 576 | 52.54 | temperature | 15 | 43200 | < th | dose independent | rect. | 6 | 11 |
| 578 | 52.54 | temperature | 15 | 14400 | > th | dose independent | rect. | 10 | 15 |
| 590 | 52.55 | temperature | 15 | 43200 | < th | dose independent | rect. | 6 | 13 |
| 594 | 52.55 | temperature | 15 | 14400 | < th | dose independent | rect. | 6 | 20 |
| 599 | 52.56 | temperature | 15 | 43200 | < th | dose independent | sin | 20 | NA |
| 617 | 52.57 | temperature | 15 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 671 | 52.62 | temperature | 15 | 43200 | > th | dose independent | rect. | 11 | 12 |
| 687 | 52.63 | temperature | 15 | 43200 | > th | dose independent | rect. | 15 | 8 |
| 720 | 52.66 | temperature | 15 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 800 | 52.72 | temperature | 15 | 43200 | > th | dose independent | rect. | 7 | 16 |
| 805 | 52.73 | temperature | 15 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 816 | 52.74 | temperature | 15 | 43200 | > th | dose independent | sin | 20 | NA |
| 822 | 52.74 | temperature | 15 | 43200 | > th | dose independent | rect. | 18 | 5 |
| 843 | 52.75 | temperature | 15 | 43200 | > th | dose independent | rect. | 7 | 13 |
| 845 | 52.75 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 873 | 52.77 | temperature | 15 | 43200 | > th | dose independent | rect. | 15 | 5 |
| 913 | 52.80 | temperature | 15 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 951 | 52.83 | temperature | 15 | 43200 | > th | dose independent | rect. | 19 | 1 |