BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0593600 Os01g0593600|AK069058
         (189 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G79990.1  | chr1:30084522-30091949 FORWARD LENGTH=1136         179   9e-46

>AT1G79990.1 | chr1:30084522-30091949 FORWARD LENGTH=1136
          Length = 1135

 Score =  179 bits (454), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 82/151 (54%), Positives = 103/151 (68%)

Query: 38  MFYGAMVWDPWLIVSQIVXXXXXXXXXXXXXXXXXVGTRVPRLTLLYLFDFATLTPRTTT 97
           MFYG  VWDPWLIV QI+                 +G RVPRL+L+Y FD+ATLT  T T
Sbjct: 1   MFYGTAVWDPWLIVGQIICLQCSYYLTLGLFTMVFLGLRVPRLSLVYFFDYATLTTSTFT 60

Query: 98  GWCVIXXXXXXXXXXXXXMLYVIERAKKCLDFAATLYIIHLFICIVYGGWPASVTWWVVN 157
           GW VI             M++++ERA+KCLDF+ATLYIIHLF CI+YGGWP+S+ WWVVN
Sbjct: 61  GWSVIASFLFSSLAGAVYMIFLVERARKCLDFSATLYIIHLFFCIMYGGWPSSMAWWVVN 120

Query: 158 IAGLAIMSLLGEYLCIRRELKEIPISRLRAS 188
             GLA+M+LL EYLCI+RE +EIP+ R  ++
Sbjct: 121 GTGLAVMALLAEYLCIKREQREIPMDRFHSN 151



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.330    0.143    0.475 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,802,330
Number of extensions: 75827
Number of successful extensions: 163
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 96
Effective length of database: 8,556,881
Effective search space: 821460576
Effective search space used: 821460576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 109 (46.6 bits)