BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0593600 Os01g0593600|AK069058
         (189 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0593600  Conserved hypothetical protein                      268   2e-72

>Os01g0593600 Conserved hypothetical protein
          Length = 189

 Score =  268 bits (684), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 142/189 (75%), Positives = 142/189 (75%)

Query: 1   PREGREIXXXXXXXXXATSDLGCVLXXXXXXXXKEEKMFYGAMVWDPWLIVSQIVXXXXX 60
           PREGREI         ATSDLGCVL        KEEKMFYGAMVWDPWLIVSQIV     
Sbjct: 1   PREGREIPPPPQPPPPATSDLGCVLRRRRRRRRKEEKMFYGAMVWDPWLIVSQIVCLQCL 60

Query: 61  XXXXXXXXXXXXVGTRVPRLTLLYLFDFATLTPRTTTGWCVIXXXXXXXXXXXXXMLYVI 120
                       VGTRVPRLTLLYLFDFATLTPRTTTGWCVI             MLYVI
Sbjct: 61  YYLALGLLMALLVGTRVPRLTLLYLFDFATLTPRTTTGWCVIAAFLLAAAAGAAFMLYVI 120

Query: 121 ERAKKCLDFAATLYIIHLFICIVYGGWPASVTWWVVNIAGLAIMSLLGEYLCIRRELKEI 180
           ERAKKCLDFAATLYIIHLFICIVYGGWPASVTWWVVNIAGLAIMSLLGEYLCIRRELKEI
Sbjct: 121 ERAKKCLDFAATLYIIHLFICIVYGGWPASVTWWVVNIAGLAIMSLLGEYLCIRRELKEI 180

Query: 181 PISRLRASV 189
           PISRLRASV
Sbjct: 181 PISRLRASV 189



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.330    0.143    0.475 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,339,637
Number of extensions: 116408
Number of successful extensions: 239
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 94
Effective length of database: 12,075,471
Effective search space: 1135094274
Effective search space used: 1135094274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 153 (63.5 bits)