Os01g0585700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SIT4 phosphatase-associated protein family protein.
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Os01g0585700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SIT4 phosphatase-associated protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.73 | 0.174 | 12.6 | -0.0843 | 0.473 | -0.564 | -0.0739 | -2.19 | 0.304 | 2.64 | 4.89 | 4260 | -- | -- |
| 16.21 | 0.188 | 12.6 | -0.0586 | 0.478 | -0.224 | -0.0388 | -- | 0.257 | 2.39 | 5.042 | 4268 | -- | -- |
| 13.73 | 0.173 | 12.6 | -0.0948 | 0.477 | -0.583 | -- | -2.3 | 0.306 | 2.67 | 4.789 | 4224 | -- | -- |
| 16.2 | 0.187 | 12.6 | -0.0613 | 0.485 | -0.233 | -- | -- | 0.259 | 2.56 | 4.999 | 4259 | -- | -- |
| 25.66 | 0.236 | 12.6 | -0.0795 | -- | -0.593 | -- | -2.21 | 0.317 | -- | 4.855 | 4531 | -- | -- |
| 17.12 | 0.194 | 12.6 | 0.0203 | 0.482 | -- | -0.061 | -- | 0.275 | 2.46 | -- | -- | -- | -- |
| 17.14 | 0.194 | 12.6 | 0.0219 | 0.482 | -- | -- | -- | 0.276 | 2.47 | -- | -- | -- | -- |
| 28.76 | 0.25 | 12.6 | -0.0865 | -- | -0.314 | -- | -- | 0.286 | -- | 5.723 | 4620 | -- | -- |
| 16.28 | 0.188 | 12.6 | -- | 0.482 | -0.211 | -- | -- | 0.266 | 2.55 | 4.96 | 4268 | -- | -- |
| 30.82 | 0.259 | 12.6 | 0.0423 | -- | -- | -- | -- | 0.288 | -- | -- | -- | -- | -- |
| 17.15 | 0.194 | 12.6 | -- | 0.482 | -- | -- | -- | 0.273 | 2.47 | -- | -- | -- | -- |
| 28.88 | 0.25 | 12.6 | -- | -- | -0.313 | -- | -- | 0.298 | -- | 5.685 | 4613 | -- | -- |
| 30.86 | 0.259 | 12.6 | -- | -- | -- | -- | -- | 0.283 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.14 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 19 |
| 3 | 13.23 | wind | 5 | 4320 | > th | dose dependent | rect. | 17 | 22 |
| 5 | 13.34 | wind | 5 | 4320 | > th | dose independent | rect. | 17 | 22 |
| 8 | 13.46 | wind | 5 | 4320 | < th | dose independent | rect. | 17 | 22 |
| 16 | 13.62 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 19 |
| 18 | 13.63 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 22 |
| 24 | 13.67 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 22 |
| 33 | 13.73 | wind | 5 | 4320 | > th | dose dependent | rect. | 17 | 19 |
| 38 | 13.75 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 41 | 13.76 | wind | 3 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 43 | 13.77 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 44 | 13.77 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 48 | 13.77 | wind | 5 | 4320 | > th | dose independent | rect. | 17 | 18 |
| 52 | 13.77 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 20 |
| 53 | 13.77 | wind | 9 | 4320 | > th | dose dependent | rect. | 17 | 21 |
| 54 | 13.78 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 56 | 13.78 | wind | 5 | 4320 | > th | dose dependent | rect. | 17 | 10 |
| 60 | 13.79 | wind | 5 | 4320 | < th | dose independent | rect. | 16 | 19 |
| 61 | 13.79 | wind | 5 | 4320 | > th | dose dependent | rect. | 5 | 22 |
| 66 | 13.79 | wind | 5 | 4320 | > th | dose dependent | rect. | 13 | 23 |
| 76 | 13.81 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 80 | 13.81 | wind | 5 | 4320 | > th | dose dependent | no | NA | NA |
| 85 | 13.81 | wind | 5 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 101 | 13.83 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 121 | 13.85 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 2 | 8 |
| 143 | 13.87 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 148 | 13.87 | wind | 5 | 4320 | > th | dose independent | rect. | 23 | 23 |
| 157 | 13.88 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 166 | 13.88 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 22 | 12 |
| 173 | 13.89 | wind | 5 | 4320 | > th | dose independent | no | NA | NA |
| 191 | 13.89 | wind | 5 | 4320 | > th | dose independent | rect. | 12 | 23 |
| 193 | 13.90 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 7 | NA |
| 212 | 13.90 | wind | 5 | 4320 | > th | dose independent | rect. | 4 | 23 |
| 213 | 13.90 | wind | 5 | 4320 | > th | dose independent | rect. | 6 | 23 |
| 216 | 13.91 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 262 | 13.93 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 7 | NA |
| 279 | 13.93 | wind | 5 | 4320 | > th | dose independent | rect. | 2 | 23 |
| 281 | 13.93 | wind | 5 | 4320 | > th | dose independent | rect. | 8 | 23 |
| 303 | 13.94 | wind | 5 | 4320 | < th | dose independent | rect. | 12 | 23 |
| 305 | 13.94 | wind | 5 | 4320 | < th | dose independent | rect. | 23 | 23 |
| 334 | 13.96 | wind | 5 | 4320 | < th | dose independent | no | NA | NA |
| 357 | 13.97 | wind | 5 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 379 | 13.97 | wind | 5 | 4320 | < th | dose independent | rect. | 4 | 23 |
| 380 | 13.97 | wind | 5 | 4320 | < th | dose independent | rect. | 6 | 23 |
| 382 | 13.97 | wind | 5 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 391 | 13.98 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 438 | 13.99 | wind | 5 | 4320 | < th | dose independent | rect. | 2 | 23 |
| 441 | 13.99 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 475 | 14.00 | wind | 7 | 4320 | > th | dose dependent | sin | 14 | NA |
| 476 | 14.00 | wind | 1 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 488 | 14.01 | wind | 7 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 509 | 14.02 | wind | 9 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 560 | 14.04 | wind | 7 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 582 | 14.05 | wind | 5 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 593 | 14.05 | wind | 5 | 4320 | > th | dose independent | rect. | 23 | 19 |
| 634 | 14.07 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 8 |
| 666 | 14.08 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 8 |
| 683 | 14.08 | wind | 9 | 4320 | > th | dose dependent | rect. | 18 | 10 |
| 717 | 14.10 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 738 | 14.10 | wind | 5 | 4320 | > th | dose dependent | rect. | 17 | 5 |
| 772 | 14.11 | wind | 9 | 4320 | > th | dose dependent | rect. | 18 | 4 |
| 809 | 14.13 | wind | 1 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 810 | 14.13 | wind | 9 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 840 | 14.14 | wind | 9 | 4320 | > th | dose independent | sin | 14 | NA |
| 841 | 14.14 | wind | 7 | 4320 | < th | dose independent | sin | 15 | NA |
| 863 | 14.14 | wind | 5 | 4320 | > th | dose dependent | rect. | 5 | 10 |
| 866 | 14.15 | wind | 5 | 4320 | > th | dose independent | sin | 3 | NA |
| 903 | 14.16 | atmosphere | 1005 | 14400 | < th | dose independent | no | NA | NA |
| 954 | 14.17 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 968 | 14.18 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 970 | 14.18 | wind | 5 | 4320 | > th | dose independent | rect. | 6 | 9 |
| 989 | 14.18 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 5 | 23 |
| 991 | 14.18 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 9 | 23 |