BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0585700 Os01g0585700|AK067338
(453 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G30470.1 | chr1:10779423-10786415 FORWARD LENGTH=812 410 e-115
AT1G07990.1 | chr1:2477413-2482898 FORWARD LENGTH=803 327 8e-90
AT2G28360.1 | chr2:12124604-12129879 REVERSE LENGTH=789 327 1e-89
AT3G45190.1 | chr3:16541994-16548161 REVERSE LENGTH=790 320 1e-87
>AT1G30470.1 | chr1:10779423-10786415 FORWARD LENGTH=812
Length = 811
Score = 410 bits (1053), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/339 (60%), Positives = 253/339 (74%), Gaps = 11/339 (3%)
Query: 2 TTYGCLRPPLGKHRLKIVEFISVLLTIGSETAEKELIRQSAIKRSVDLFFEYPYNNFLHH 61
TTYG L+PPLGKHRLKIVEFISVLLT+GSE AEKE+IR A+KR +DLFFEYPYNNFLHH
Sbjct: 320 TTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKEVIRLGAVKRVLDLFFEYPYNNFLHH 379
Query: 62 HVENIIVSCLEGKRTELVEHVLNDCDIVGKILAAEKLSSLS---TESTGPTIPSDGKSIP 118
HVEN+I+SC+E K ++LV+H+L++C+++G IL AEK S+L+ ++ PT+P++GK
Sbjct: 380 HVENVILSCMESKNSQLVDHLLSECNLIGSILEAEKDSTLTAGDSDKLQPTVPAEGKKPL 439
Query: 119 KIGNIGHMTRITNKLIQLGSSNGTIQIHLQENSEWVDWQTDVLVKRNEVENVYHWACGRP 178
+IGNIGH+TRI+NKL+QL +SN IQ HLQENS+WVDWQTDVL KRN +ENVY WACGRP
Sbjct: 440 RIGNIGHLTRISNKLLQLANSNVEIQSHLQENSKWVDWQTDVLSKRNTLENVYSWACGRP 499
Query: 179 TSLHXXXXXXXXXXXXXXXXXVAALANNLSQAFRYGIYSNDDMEENQGTLERDDEDVYFD 238
TSLH VAALANNLSQAFRYGIYSNDDM+E QG++ERDDEDVYFD
Sbjct: 500 TSLHDRSRDSDDDDYHDRDYDVAALANNLSQAFRYGIYSNDDMDEAQGSMERDDEDVYFD 559
Query: 239 DESAEVVISSLRLGDDQDG-SLFTNSNWFTFDGERGITDRLAAVXXXXXXXXXXXXDTEE 297
DESAEVVISSLRLGDDQ+ SLFTNSNWF FD ++ +R D +
Sbjct: 560 DESAEVVISSLRLGDDQESDSLFTNSNWFAFDDDKAANER----SMTSAASPSPNADGDG 615
Query: 298 TDDGEVVIGTEDHMDTVNLGNGPIE-EAEDAAEFTKHPA 335
DD +VVIG D + + P++ E ED+ +KHP+
Sbjct: 616 EDDDDVVIGEADEFNATAASSPPVDMETEDST--SKHPS 652
>AT1G07990.1 | chr1:2477413-2482898 FORWARD LENGTH=803
Length = 802
Score = 327 bits (838), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 182/312 (58%), Positives = 219/312 (70%), Gaps = 8/312 (2%)
Query: 1 PTTYGCLRPPLGKHRLKIVEFISVLLTIGSETAEKELIRQSAIKRSVDLFFEYPYNNFLH 60
PTTYG LRPPLGKHRLKIVEFI+VLL SE A+KEL+ IKR++DLFFEYPYNN LH
Sbjct: 322 PTTYGELRPPLGKHRLKIVEFIAVLLKTRSEAAQKELVSSGTIKRTLDLFFEYPYNNALH 381
Query: 61 HHVENIIVSCLEGKRTELVEHVLNDCDIVGKILAAEKLSSLSTESTGPTIPSDGKSIPKI 120
H VE+II+SCLE K +V H+L DCD++GK L +++ S+L +S PT+ + GK P++
Sbjct: 382 HQVESIILSCLENKSDLMVNHILRDCDLIGKFLLSDRDSNLLGDSQ-PTVAASGKKKPRV 440
Query: 121 GNIGHMTRITNKLIQLGSSNGTIQIHLQENSEWVDWQTDVLVKRNEVENVYHWACGRPTS 180
G +GH+TRI+NK+ QL +SNG I+ +LQENSEW +WQ VL RN VENV W CGRPT+
Sbjct: 441 GYVGHITRISNKIGQLSNSNGQIKAYLQENSEWNEWQGSVLQDRNTVENVNRWGCGRPTT 500
Query: 181 LHXXXXXXXXXXXXXXXXXVAALANNLSQAFRYGIYSNDDMEENQGTLERDDEDVYFDDE 240
L VAALANNLSQAFRY IY NDD EE+ L+RDD+DVYFDDE
Sbjct: 501 LQ---DRTRDSDEEDRDYDVAALANNLSQAFRYKIYGNDDNEEDHNALDRDDDDVYFDDE 557
Query: 241 SAEVVISSLRLGDDQDGSLFTNSNWFTFDGER-GIT--DRLAAVXXXXXXXXXXXXDTEE 297
SAEVVISSLRLGDDQ GSLFTNSNWFTF +R G T D + +T
Sbjct: 558 SAEVVISSLRLGDDQ-GSLFTNSNWFTFQDDRFGSTPSDTAGSNTIDVELNKTYNANTSS 616
Query: 298 TDDGEVVIGTED 309
+DD EVV+G ED
Sbjct: 617 SDDDEVVVGEED 628
>AT2G28360.1 | chr2:12124604-12129879 REVERSE LENGTH=789
Length = 788
Score = 327 bits (837), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 164/275 (59%), Positives = 200/275 (72%), Gaps = 8/275 (2%)
Query: 1 PTTYGCLRPPLGKHRLKIVEFISVLLTIGSETAEKELIRQSAIKRSVDLFFEYPYNNFLH 60
PTTYG LRPPLGKHRLKIVEFI+VLL G+E A EL IKR ++LFFEYPYNN LH
Sbjct: 322 PTTYGELRPPLGKHRLKIVEFIAVLLKSGNEAAGTELAISGTIKRILELFFEYPYNNALH 381
Query: 61 HHVENIIVSCLEGKRTELVEHVLNDCDIVGKILAAEKLSSLSTESTGPTIPSDGKSIPKI 120
H VE+II+SCLE K +V H+L DC+++ KIL+++K S+LS ++ PT+ + GK P++
Sbjct: 382 HQVESIILSCLENKSEIMVNHILQDCNLISKILSSDKDSALSGDNL-PTVVATGKKPPRV 440
Query: 121 GNIGHMTRITNKLIQLGSSNGTIQIHLQENSEWVDWQTDVLVKRNEVENVYHWACGRPTS 180
G +GH+TR+ NKL+QL SN I+ LQENSEW +WQ+ VL +RN VENVY WACGRPT+
Sbjct: 441 GYVGHITRLWNKLVQLSDSNALIKTSLQENSEWNEWQSSVLKERNTVENVYRWACGRPTT 500
Query: 181 LHXXXXXXXXXXXXXXXXXVAALANNLSQAFRYGIYSNDDMEENQ---GTLERDDEDVYF 237
L VAALANNL+QAF Y IY N+D EE+Q L+RDD D YF
Sbjct: 501 LQ---DRTRDSDEEDRDYDVAALANNLNQAFNYRIYGNEDNEEDQNALNALDRDDSDSYF 557
Query: 238 DDESAEVVISSLRLGDDQDGSLFTNSNWFTFDGER 272
DDESAEVVISSLRLGDDQ GSL TNS+WFTF +R
Sbjct: 558 DDESAEVVISSLRLGDDQ-GSLLTNSDWFTFQDDR 591
>AT3G45190.1 | chr3:16541994-16548161 REVERSE LENGTH=790
Length = 789
Score = 320 bits (819), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 152/271 (56%), Positives = 195/271 (71%), Gaps = 2/271 (0%)
Query: 1 PTTYGCLRPPLGKHRLKIVEFISVLLTIGSETAEKELIRQSAIKRSVDLFFEYPYNNFLH 60
PTTYG LRPPLG HRLKIVEFI+VLL SE KEL AI+R +DLFFEYPYNN LH
Sbjct: 322 PTTYGQLRPPLGSHRLKIVEFIAVLLKTRSEATGKELASSGAIRRVLDLFFEYPYNNALH 381
Query: 61 HHVENIIVSCLEGKRTELVEHVLNDCDIVGKILAAEKLSSLSTESTGPTIPSDGKSIPKI 120
H VE+II+SCLE K E+V+H+L +CD++GKI+ EK LS + PT+ + GK P++
Sbjct: 382 HQVESIILSCLESKNDEIVDHLLRECDLIGKIIKTEKQPILSGDKQ-PTLAAAGKQAPRV 440
Query: 121 GNIGHMTRITNKLIQLGSSNGTIQIHLQENSEWVDWQTDVLVKRNEVENVYHWACGRPTS 180
GN+GH++RI+NKL+QL +++ I+ L+EN++W +W+ + L RN VENVY W CGRPT+
Sbjct: 441 GNVGHISRISNKLVQLSTNSNQIKTLLEENNDWGEWEANTLHDRNAVENVYRWVCGRPTA 500
Query: 181 LHXXXXXXXXXXXXXXXXXVAALANNLSQAFRYGIYSNDDMEENQGTLERDDEDVYFDDE 240
LH +A LANNL+Q FRY + N+ E G+ +RD+EDVYFDDE
Sbjct: 501 LHDRTRDSDDDEVHDRDYDLAGLANNLNQ-FRYNMQENNGAGEEHGSNDRDEEDVYFDDE 559
Query: 241 SAEVVISSLRLGDDQDGSLFTNSNWFTFDGE 271
SAEVVISSLRLGD+Q +LFTNSNWFTF G+
Sbjct: 560 SAEVVISSLRLGDEQANNLFTNSNWFTFQGD 590
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.310 0.130 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,178,799
Number of extensions: 366270
Number of successful extensions: 1035
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1020
Number of HSP's successfully gapped: 4
Length of query: 453
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 351
Effective length of database: 8,310,137
Effective search space: 2916858087
Effective search space used: 2916858087
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 113 (48.1 bits)