Os01g0585100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0585100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 152.09 | 0.579 | 10 | 0.161 | 3.7 | 1.5 | -0.866 | -1.67 | -0.38 | 7.07 | 10.02 | 1317 | -- | -- |
| 156.68 | 0.583 | 9.99 | 0.367 | 3.68 | 1.52 | -0.798 | -- | -0.326 | 7.04 | 10.02 | 1338 | -- | -- |
| 153.98 | 0.578 | 10 | 0.166 | 3.68 | 1.5 | -- | -1.51 | -0.379 | 7.09 | 10.01 | 1317 | -- | -- |
| 157.68 | 0.585 | 9.97 | 0.408 | 3.69 | 1.45 | -- | -- | -0.266 | 7.06 | 10.03 | 1335 | -- | -- |
| 823.48 | 1.34 | 10 | 0.373 | -- | 1.34 | -- | -0.918 | -0.231 | -- | 20.29 | 1469 | -- | -- |
| 211.88 | 0.682 | 9.87 | 0.836 | 3.56 | -- | -0.998 | -- | 0.12 | 6.78 | -- | -- | -- | -- |
| 214.37 | 0.686 | 9.87 | 0.82 | 3.56 | -- | -- | -- | 0.124 | 6.81 | -- | -- | -- | -- |
| 804.42 | 1.32 | 9.99 | 0.562 | -- | 1.22 | -- | -- | 0.0226 | -- | 50.83 | 1444 | -- | -- |
| 161.85 | 0.593 | 9.98 | -- | 3.67 | 1.51 | -- | -- | -0.268 | 7.08 | 10 | 1336 | -- | -- |
| 876.72 | 1.38 | 9.94 | 0.898 | -- | -- | -- | -- | 0.192 | -- | -- | -- | -- | -- |
| 232.08 | 0.713 | 9.89 | -- | 3.57 | -- | -- | -- | 0.0323 | 6.8 | -- | -- | -- | -- |
| 816.09 | 1.33 | 10 | -- | -- | 1.28 | -- | -- | -0.0451 | -- | 50.85 | 1450 | -- | -- |
| 898.01 | 1.4 | 9.97 | -- | -- | -- | -- | -- | 0.0927 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 152.14 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 4 | 152.93 | radiation | 20 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 5 | 153.05 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 6 | 153.10 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 8 | 153.12 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 15 | 153.88 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 17 | 154.03 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 20 | 154.33 | radiation | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 21 | 154.45 | humidity | 70 | 720 | > th | dose dependent | rect. | 7 | 17 |
| 28 | 154.78 | radiation | 20 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 31 | 154.85 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 7 |
| 46 | 155.00 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 63 | 155.11 | radiation | 10 | 1440 | > th | dose independent | sin | 6 | NA |
| 64 | 155.20 | temperature | 25 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 68 | 155.33 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 72 | 155.45 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 98 | 155.72 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 99 | 155.72 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 100 | 155.73 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 101 | 155.73 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 9 |
| 104 | 155.77 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 122 | 155.84 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 124 | 155.84 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 147 | 156.02 | temperature | 30 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 148 | 156.04 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 156 | 156.19 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 159 | 156.23 | temperature | 30 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 161 | 156.23 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 189 | 156.34 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 10 |
| 192 | 156.36 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 194 | 156.38 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 17 |
| 206 | 156.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 207 | 156.44 | temperature | 25 | 14400 | > th | dose dependent | rect. | 21 | 11 |
| 211 | 156.46 | radiation | 30 | 1440 | > th | dose dependent | rect. | 14 | 19 |
| 213 | 156.47 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 15 |
| 254 | 156.59 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 255 | 156.59 | temperature | 30 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 264 | 156.70 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 19 |
| 284 | 156.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 287 | 156.83 | temperature | 30 | 14400 | < th | dose independent | rect. | 24 | 13 |
| 290 | 156.84 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 10 |
| 300 | 156.85 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 19 |
| 304 | 156.86 | temperature | 25 | 14400 | > th | dose dependent | sin | 10 | NA |
| 322 | 156.94 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 323 | 156.94 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 354 | 157.02 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 357 | 157.03 | temperature | 30 | 14400 | > th | dose dependent | rect. | 18 | 22 |
| 366 | 157.06 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 434 | 157.13 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 7 |
| 463 | 157.14 | radiation | 20 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 502 | 157.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 505 | 157.18 | temperature | 30 | 14400 | > th | dose dependent | sin | 22 | NA |
| 515 | 157.20 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 562 | 157.23 | temperature | 30 | 14400 | > th | dose dependent | no | NA | NA |
| 656 | 157.24 | temperature | 30 | 14400 | < th | dose independent | sin | 6 | NA |
| 666 | 157.25 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 667 | 157.25 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 729 | 157.31 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 14 |
| 739 | 157.32 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 752 | 157.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 788 | 157.36 | temperature | 25 | 14400 | > th | dose dependent | rect. | 2 | 6 |
| 801 | 157.40 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 821 | 157.44 | temperature | 30 | 14400 | > th | dose independent | sin | 6 | NA |
| 828 | 157.44 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 11 |
| 877 | 157.51 | temperature | 25 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 904 | 157.61 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 906 | 157.61 | temperature | 25 | 14400 | > th | dose dependent | rect. | 1 | 9 |
| 909 | 157.62 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 953 | 157.72 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 11 |
| 986 | 157.77 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |