BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0585100 Os01g0585100|AK069774
         (371 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0585100  Conserved hypothetical protein                      698   0.0  

>Os01g0585100 Conserved hypothetical protein
          Length = 371

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/371 (91%), Positives = 341/371 (91%)

Query: 1   MASEVEDDAAAVLTNXXXXXXEVRRRRDQAKEILSKQAVKIATKAEEHERFIFKVTHLLG 60
           MASEVEDDAAAVLTN      EVRRRRDQAKEILSKQAVKIATKAEEHERFIFKVTHLLG
Sbjct: 1   MASEVEDDAAAVLTNGGAGAAEVRRRRDQAKEILSKQAVKIATKAEEHERFIFKVTHLLG 60

Query: 61  VLGFGTFCYLLGARPQDVPYVYCLFYVIFVPLRWIYYRYKKWHYYLLDFCYYANTFLLVM 120
           VLGFGTFCYLLGARPQDVPYVYCLFYVIFVPLRWIYYRYKKWHYYLLDFCYYANTFLLVM
Sbjct: 61  VLGFGTFCYLLGARPQDVPYVYCLFYVIFVPLRWIYYRYKKWHYYLLDFCYYANTFLLVM 120

Query: 121 ILFYPKDEKLFMVCFSFAEGPLAWALIVWRCSLVFSSFDKLVSVLIHLLPGIVIFTIRWW 180
           ILFYPKDEKLFMVCFSFAEGPLAWALIVWRCSLVFSSFDKLVSVLIHLLPGIVIFTIRWW
Sbjct: 121 ILFYPKDEKLFMVCFSFAEGPLAWALIVWRCSLVFSSFDKLVSVLIHLLPGIVIFTIRWW 180

Query: 181 NPQTFAAMHPEGRAARVTWPYVEDKSYLWTWLFAVPLAAYTLWQLMYFLIVNVLRRQRLL 240
           NPQTFAAMHPEGRAARVTWPYVEDKSYLWTWLFAVPLAAYTLWQLMYFLIVNVLRRQRLL
Sbjct: 181 NPQTFAAMHPEGRAARVTWPYVEDKSYLWTWLFAVPLAAYTLWQLMYFLIVNVLRRQRLL 240

Query: 241 KDPEVMTSYRELSKKAQKANNIWWRLSGLLGDRNRPLMYILLQALFTVATMALTVPIFLS 300
           KDPEVMTSYRELSKKAQKANNIWWRLSGLLGDRNRPLMYILLQALFTVATMALTVPIFLS
Sbjct: 241 KDPEVMTSYRELSKKAQKANNIWWRLSGLLGDRNRPLMYILLQALFTVATMALTVPIFLS 300

Query: 301 FQMHVVFQILKVCASTWNGGSFILEVMPRQVVQXXXXXXXXXXXXXXXXXXXXXXXXGDL 360
           FQMHVVFQILKVCASTWNGGSFILEVMPRQVVQ                        GDL
Sbjct: 301 FQMHVVFQILKVCASTWNGGSFILEVMPRQVVQKEKKKLEMKPMEEANSSQNAEESQGDL 360

Query: 361 SANGQHSSEHS 371
           SANGQHSSEHS
Sbjct: 361 SANGQHSSEHS 371



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.329    0.140    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,176,106
Number of extensions: 420181
Number of successful extensions: 1000
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 999
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 269
Effective length of database: 11,709,973
Effective search space: 3149982737
Effective search space used: 3149982737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 157 (65.1 bits)