BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0585100 Os01g0585100|AK069774
         (371 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G35460.1  | chr5:13672598-13674546 FORWARD LENGTH=382          532   e-151

>AT5G35460.1 | chr5:13672598-13674546 FORWARD LENGTH=382
          Length = 381

 Score =  532 bits (1370), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 249/305 (81%), Positives = 278/305 (91%)

Query: 29  QAKEILSKQAVKIATKAEEHERFIFKVTHLLGVLGFGTFCYLLGARPQDVPYVYCLFYVI 88
           Q +EILSKQAVKIA +AEEHERFI KVTHL+GVLGFG FC+LLGARPQD+P VYC FYVI
Sbjct: 42  QTREILSKQAVKIAKQAEEHERFINKVTHLVGVLGFGGFCFLLGARPQDIPLVYCFFYVI 101

Query: 89  FVPLRWIYYRYKKWHYYLLDFCYYANTFLLVMILFYPKDEKLFMVCFSFAEGPLAWALIV 148
           FVPLRWIYYR+KKWHYYLLDFCYYANT  LV +L YPK+EKLFMVCFSFAEGPLAWA+IV
Sbjct: 102 FVPLRWIYYRFKKWHYYLLDFCYYANTIFLVDLLLYPKNEKLFMVCFSFAEGPLAWAIIV 161

Query: 149 WRCSLVFSSFDKLVSVLIHLLPGIVIFTIRWWNPQTFAAMHPEGRAARVTWPYVEDKSYL 208
           WRCSLVFSS DK+VSVLIHLLPG+V FTIRWWNP TFAAMHP G   RV+WPYVEDK+YL
Sbjct: 162 WRCSLVFSSPDKIVSVLIHLLPGLVFFTIRWWNPATFAAMHPVGTDRRVSWPYVEDKAYL 221

Query: 209 WTWLFAVPLAAYTLWQLMYFLIVNVLRRQRLLKDPEVMTSYRELSKKAQKANNIWWRLSG 268
           +TWLF VPL  YTLWQ++YFLIVNVLRRQRLL+DPEVMTSYRELSKKA+KANN  W+LSG
Sbjct: 222 FTWLFLVPLVVYTLWQVLYFLIVNVLRRQRLLRDPEVMTSYRELSKKAEKANNKLWQLSG 281

Query: 269 LLGDRNRPLMYILLQALFTVATMALTVPIFLSFQMHVVFQILKVCASTWNGGSFILEVMP 328
           LLGD+NR  MYIL QA+FTVATMALTVPIFLS+++HV+FQILK+ A+ WNGGSF+LEVMP
Sbjct: 282 LLGDQNRIWMYILFQAIFTVATMALTVPIFLSYRLHVIFQILKISAAVWNGGSFLLEVMP 341

Query: 329 RQVVQ 333
           RQV+Q
Sbjct: 342 RQVIQ 346



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.329    0.140    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,213,191
Number of extensions: 284371
Number of successful extensions: 793
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 793
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 271
Effective length of database: 8,364,969
Effective search space: 2266906599
Effective search space used: 2266906599
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 112 (47.8 bits)