Os01g0581300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Lycopene epsilon-cyclase (Fragment).
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Os01g0581300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Lycopene epsilon-cyclase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 105.58 | 0.483 | 12.4 | -1.39 | 0.864 | -1.41 | 1.87 | -2.43 | -0.539 | 22.4 | 30.51 | 514 | -- | -- |
| 110.58 | 0.49 | 12.4 | -1.75 | 0.86 | -1.38 | 2.08 | -- | -0.565 | 22.1 | 57.37 | 484 | -- | -- |
| 117.45 | 0.505 | 12.3 | -1.19 | 0.81 | -1.36 | -- | -4.04 | -0.416 | 21.7 | 84.11 | 675 | -- | -- |
| 128.63 | 0.528 | 12.4 | -1.9 | 0.871 | -1.52 | -- | -- | -0.618 | 22.4 | 109.2 | 478 | -- | -- |
| 149.35 | 0.569 | 12.3 | -1.33 | -- | -2.02 | -- | -4.11 | -0.517 | -- | 96.94 | 701 | -- | -- |
| 134.97 | 0.545 | 12.4 | -1.47 | 1.15 | -- | 2.36 | -- | -0.39 | 21.3 | -- | -- | -- | -- |
| 154.97 | 0.583 | 12.4 | -1.55 | 1.14 | -- | -- | -- | -0.392 | 21.2 | -- | -- | -- | -- |
| 162.48 | 0.594 | 12.4 | -2.06 | -- | -2.09 | -- | -- | -0.712 | -- | 163.7 | 678 | -- | -- |
| 213.31 | 0.68 | 12.3 | -- | 1.05 | -0.667 | -- | -- | -0.302 | 21.5 | 116.2 | 424 | -- | -- |
| 230.71 | 0.71 | 12.3 | -1.55 | -- | -- | -- | -- | -0.398 | -- | -- | -- | -- | -- |
| 218.48 | 0.691 | 12.3 | -- | 1.14 | -- | -- | -- | -0.219 | 21.1 | -- | -- | -- | -- |
| 263.86 | 0.757 | 12.3 | -- | -- | -1.33 | -- | -- | -0.388 | -- | 121.1 | 625 | -- | -- |
| 293.96 | 0.8 | 12.3 | -- | -- | -- | -- | -- | -0.226 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.61 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 18 |
| 3 | 105.86 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 21 |
| 4 | 105.92 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 5 | 105.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 20 |
| 9 | 106.09 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 12 | 106.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 16 | 106.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 17 |
| 30 | 106.47 | temperature | 25 | 720 | > th | dose independent | rect. | 23 | 20 |
| 36 | 106.54 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 16 |
| 49 | 106.67 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 64 | 106.74 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 77 | 106.81 | temperature | 30 | 270 | < th | dose dependent | sin | 21 | NA |
| 113 | 107.03 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 146 | 107.17 | temperature | 25 | 720 | < th | dose dependent | sin | 0 | NA |
| 155 | 107.20 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 23 | 18 |
| 164 | 107.27 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 181 | 107.34 | temperature | 25 | 720 | < th | dose independent | rect. | 23 | 20 |
| 232 | 107.57 | temperature | 25 | 720 | > th | dose independent | rect. | 23 | 15 |
| 234 | 107.58 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 249 | 107.65 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 261 | 107.69 | temperature | 25 | 720 | < th | dose independent | sin | 5 | NA |
| 280 | 107.76 | temperature | 25 | 720 | < th | dose independent | rect. | 23 | 16 |
| 287 | 107.77 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 322 | 107.88 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 331 | 107.91 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 352 | 108.01 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 353 | 108.02 | temperature | 25 | 720 | > th | dose independent | sin | 5 | NA |
| 385 | 108.13 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 5 | 18 |
| 410 | 108.21 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 418 | 108.24 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 480 | 108.46 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 5 | 21 |
| 540 | 108.65 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 542 | 108.66 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 10 |
| 620 | 108.88 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 639 | 108.94 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 680 | 109.02 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 6 |
| 687 | 109.03 | temperature | 15 | 270 | > th | dose dependent | sin | 22 | NA |
| 715 | 109.08 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 9 |
| 726 | 109.10 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 755 | 109.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 775 | 109.22 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 14 |
| 799 | 109.28 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 6 |
| 816 | 109.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 6 |
| 953 | 109.60 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 21 |
| 971 | 109.65 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 2 |
| 985 | 109.67 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 17 |