Os01g0550600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0550600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 186.88 | 0.642 | 5.76 | 3.13 | 1.95 | 0.375 | 0.965 | -5.18 | 0.954 | 22.5 | 24.7 | 1734 | -- | -- |
| 211.66 | 0.678 | 5.91 | 2.1 | 1.93 | 0.678 | 1.09 | -- | 0.594 | 22.6 | 14.4 | 47520 | -- | -- |
| 189.34 | 0.641 | 5.74 | 3.22 | 1.98 | 0.417 | -- | -5.77 | 0.972 | 22.5 | 24.71 | 2242 | -- | -- |
| 216.5 | 0.685 | 5.91 | 2.05 | 1.92 | 0.672 | -- | -- | 0.589 | 22.5 | 14.21 | 47520 | -- | -- |
| 419.49 | 0.954 | 5.7 | 3.21 | -- | 0.38 | -- | -5.32 | 0.954 | -- | 24.67 | 1416 | -- | -- |
| 218.05 | 0.692 | 5.95 | 1.52 | 1.92 | -- | 1.08 | -- | 0.43 | 22.6 | -- | -- | -- | -- |
| 222.84 | 0.699 | 5.95 | 1.48 | 1.92 | -- | -- | -- | 0.427 | 22.5 | -- | -- | -- | -- |
| 423.66 | 0.963 | 5.84 | 1.65 | -- | 0.521 | -- | -- | 0.692 | -- | 24.67 | 1416 | -- | -- |
| 222.97 | 0.695 | 6.04 | -- | 1.89 | -1.05 | -- | -- | 0.0509 | 22.6 | 33.38 | 47225 | -- | -- |
| 448.85 | 0.99 | 5.9 | 1.51 | -- | -- | -- | -- | 0.436 | -- | -- | -- | -- | -- |
| 280.57 | 0.784 | 5.99 | -- | 1.93 | -- | -- | -- | 0.262 | 22.6 | -- | -- | -- | -- |
| 443.64 | 0.981 | 5.99 | -- | -- | -1.04 | -- | -- | 0.0397 | -- | 33.2 | 47221 | -- | -- |
| 509.33 | 1.05 | 5.94 | -- | -- | -- | -- | -- | 0.268 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 185.78 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 14 | 9 |
| 2 | 185.82 | temperature | 25.0 | 1440 | < th | dose independent | sin | 17 | NA |
| 6 | 185.98 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 10 | 17 |
| 7 | 186.02 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 10 | 14 |
| 16 | 186.24 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 10 | 14 |
| 20 | 186.28 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 14 | 9 |
| 23 | 186.31 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 45 | 186.69 | temperature | 25.0 | 1440 | > th | dose independent | sin | 17 | NA |
| 75 | 187.17 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 196 | 189.00 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 202 | 189.03 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 13 | 18 |
| 218 | 189.23 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 224 | 189.27 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 2 | 21 |
| 252 | 189.46 | temperature | 25.0 | 1440 | < th | dose independent | no | NA | NA |
| 258 | 189.50 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 263 | 189.55 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 14 | NA |
| 282 | 189.68 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 19 | 3 |
| 294 | 189.75 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 311 | 189.83 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 341 | 190.02 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 10 |
| 375 | 190.22 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 440 | 190.56 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 449 | 190.60 | temperature | 25.0 | 1440 | > th | dose independent | no | NA | NA |
| 457 | 190.66 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 461 | 190.70 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 486 | 190.83 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 20 |
| 488 | 190.84 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 497 | 190.89 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 546 | 191.17 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 549 | 191.18 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 573 | 191.33 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 577 | 191.33 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 583 | 191.34 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 601 | 191.36 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 608 | 191.42 | wind | 3.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 617 | 191.49 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 621 | 191.50 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 18 | 4 |
| 635 | 191.57 | temperature | 20.0 | 1440 | > th | dose dependent | no | NA | NA |
| 637 | 191.57 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 12 |
| 638 | 191.58 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 12 | 18 |
| 644 | 191.61 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 646 | 191.61 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 651 | 191.62 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 654 | 191.63 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 655 | 191.63 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 12 | 18 |
| 659 | 191.64 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 661 | 191.65 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 667 | 191.66 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 10 |
| 673 | 191.67 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 680 | 191.67 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 690 | 191.71 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 694 | 191.72 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 708 | 191.76 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 718 | 191.81 | wind | 1.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 724 | 191.82 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 746 | 191.91 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 13 | 7 |
| 761 | 191.98 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 774 | 191.98 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 17 | 4 |
| 780 | 191.99 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 783 | 191.99 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 784 | 191.99 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 851 | 192.17 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 12 | 6 |
| 867 | 192.18 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 890 | 192.23 | radiation | 1.0 | 43200 | > th | dose independent | sin | 15 | NA |
| 912 | 192.26 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 12 | 12 |
| 916 | 192.28 | radiation | 1.0 | 43200 | < th | dose independent | sin | 15 | NA |
| 925 | 192.29 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 12 | 11 |
| 932 | 192.30 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 12 | 7 |
| 955 | 192.35 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 981 | 192.39 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 24 | 6 |
| 994 | 192.43 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 15 | 9 |