BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0550600 Os01g0550600|Os01g0550600
         (873 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G53020.1  | chr5:21499899-21502235 FORWARD LENGTH=721          121   2e-27
AT3G45900.1  | chr3:16874566-16875984 REVERSE LENGTH=390           65   2e-10

>AT5G53020.1 | chr5:21499899-21502235 FORWARD LENGTH=721
          Length = 720

 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 107/224 (47%), Gaps = 40/224 (17%)

Query: 653 KMDIQALAVSYKIKRLKQQLLVLENLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR 712
           +MD+ AL VSYKIKRLKQQL++LE                                    
Sbjct: 520 RMDLHALGVSYKIKRLKQQLMMLERYIGKPESQETEKNSSDTG----------------- 562

Query: 713 QQYPRSYQMMVSFLSKHVKRYQSLEDKIDDLCTXXXXXXXXXXXXXXXXXXXXXXXXXXX 772
               R+  ++++ L+K V RYQSL++KIDDLC                            
Sbjct: 563 ---KRALLLLITLLNKQVTRYQSLQEKIDDLC--------------KRMHVNDPQKISGK 605

Query: 773 XXXDREQSAALARFLEETFQLQRYMVATGQKLLEMQSRIAPSLER------AAXXXXXXX 826
              + E   +L  FL+ETFQLQRY+VATGQKL+E+QS+IA                    
Sbjct: 606 NRANGEAKTSLEHFLDETFQLQRYIVATGQKLMEIQSKIASGFVEFLVDLITTESSSSSS 665

Query: 827 XXXXXRFMDVVGALLRDVQRGLEVRIARIIGDLEGTLTFHGILH 870
                RF + + +L ++VQRGLEVRI+R IGDLEGTL   G++H
Sbjct: 666 SFDPERFAENIKSLFQEVQRGLEVRISRCIGDLEGTLAREGMIH 709



>AT3G45900.1 | chr3:16874566-16875984 REVERSE LENGTH=390
          Length = 389

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 63/152 (41%), Gaps = 20/152 (13%)

Query: 716 PRSYQMMVSFLSKHVKRYQSLEDKIDDLCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 775
           P     + S L K  KRYQ+L  KIDDLC                               
Sbjct: 242 PSDISKVPSLLKKQAKRYQALSGKIDDLCRRMQSSDPCDATLGPEFRTQRQNE------- 294

Query: 776 DREQSAALARFLEETFQLQRYMVATGQKLLEMQSRIAPSLERAAXXXXXXXXXXXXRFMD 835
                     FL E F+LQ+    TGQKL+ +Q+ I  S +               R +D
Sbjct: 295 ----------FLLECFRLQQRASETGQKLVSLQTEITRSNQ---GDQLSQAKMNTGRSLD 341

Query: 836 VVGALLRDVQRGLEVRIARIIGDLEGTLTFHG 867
           ++   L++VQR LE+ +ARIIGDLEG L   G
Sbjct: 342 LIKNNLKEVQRNLEIWLARIIGDLEGILARDG 373



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,281,604
Number of extensions: 241816
Number of successful extensions: 860
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 858
Number of HSP's successfully gapped: 2
Length of query: 873
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 766
Effective length of database: 8,173,057
Effective search space: 6260561662
Effective search space used: 6260561662
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 116 (49.3 bits)