BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0550600 Os01g0550600|Os01g0550600
(873 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0550600 Conserved hypothetical protein 839 0.0
>Os01g0550600 Conserved hypothetical protein
Length = 873
Score = 839 bits (2167), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/610 (72%), Positives = 442/610 (72%)
Query: 264 RLRRDAEHKDKILSAMLRKSKIDMEDREMLVREVKMCKARRKQAELEADRWRKMWEXXXX 323
RLRRDAEHKDKILSAMLRKSKIDMEDREMLVREVKMCKARRKQAELEADRWRKMWE
Sbjct: 264 RLRRDAEHKDKILSAMLRKSKIDMEDREMLVREVKMCKARRKQAELEADRWRKMWESRHR 323
Query: 324 XXXXXXXXXXXXXDHPGCSDKLTSPDAAVAPCAHDTKILFVDRVEDADAAKKCRHXXXXX 383
DHPGCSDKLTSPDAAVAPCAHDTKILFVDRVEDADAAKKCRH
Sbjct: 324 RGSRSSARCAAAADHPGCSDKLTSPDAAVAPCAHDTKILFVDRVEDADAAKKCRHTAAPP 383
Query: 384 XXXXXXXXXVECVDRYPSHVDDKPVVEEYQDLQEWFKMETEKYTSMIRRRHSAEVEAFTE 443
VECVDRYPSHVDDKPVVEEYQDLQEWFKMETEKYTSMIRRRHSAEVEAFTE
Sbjct: 384 PPPTKDPTTVECVDRYPSHVDDKPVVEEYQDLQEWFKMETEKYTSMIRRRHSAEVEAFTE 443
Query: 444 QLRLKDEKLEAFRWRAASMDAEASRLRSRLQELEARLSXXXXXXXXXXXXXVARDDENRS 503
QLRLKDEKLEAFRWRAASMDAEASRLRSRLQELEARLS VARDDENRS
Sbjct: 444 QLRLKDEKLEAFRWRAASMDAEASRLRSRLQELEARLSEQEQRRAALEALLVARDDENRS 503
Query: 504 LMERLAASDDQGRALXXXXXXXXXXXCEHRAPRSPXXXXXXXXXXXXXXIKSLEPVSPGG 563
LMERLAASDDQGRAL CEHRAPRSP IKSLEPVSPGG
Sbjct: 504 LMERLAASDDQGRALDVVVVDGGGGGCEHRAPRSPEGAEAADARLAVAEIKSLEPVSPGG 563
Query: 564 DTNKVFDMEETEARDVEISVQNDVSAAVSPDELQLVEHDDHRAIAPARNXXXXXXXXXXX 623
DTNKVFDMEETEARDVEISVQNDVSAAVSPDELQLVEHDDHRAIAPARN
Sbjct: 564 DTNKVFDMEETEARDVEISVQNDVSAAVSPDELQLVEHDDHRAIAPARNSYTCEIEEEED 623
Query: 624 XXXXXXXXXXXXXLALVVAAPPEQRTTASKMDIQALAVSYKIKRLKQQLLVLENLXXXXX 683
LALVVAAPPEQRTTASKMDIQALAVSYKIKRLKQQLLVLENL
Sbjct: 624 EEKELPSSSSSSSLALVVAAPPEQRTTASKMDIQALAVSYKIKRLKQQLLVLENLAAAAA 683
Query: 684 XXXXXXXXXXXXXXXXXXXXXXXXXXXXRQQYPRSYQMMVSFLSKHVKRYQSLEDKIDDL 743
RQQYPRSYQMMVSFLSKHVKRYQSLEDKIDDL
Sbjct: 684 GGKDTVTTATNPSTNTAAATAAGGGGGGRQQYPRSYQMMVSFLSKHVKRYQSLEDKIDDL 743
Query: 744 CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDREQSAALARFLEETFQLQRYMVATGQK 803
CT DREQSAALARFLEETFQLQRYMVATGQK
Sbjct: 744 CTRMEESKRGGGRERHHRRRRQRRESEEDGSGDREQSAALARFLEETFQLQRYMVATGQK 803
Query: 804 LLEMQSRIAPSLERAAXXXXXXXXXXXXRFMDVVGALLRDVQRGLEVRIARIIGDLEGTL 863
LLEMQSRIAPSLERAA RFMDVVGALLRDVQRGLEVRIARIIGDLEGTL
Sbjct: 804 LLEMQSRIAPSLERAAGNGGGNDGVDMGRFMDVVGALLRDVQRGLEVRIARIIGDLEGTL 863
Query: 864 TFHGILHTTF 873
TFHGILHTTF
Sbjct: 864 TFHGILHTTF 873
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.131 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,047,229
Number of extensions: 401063
Number of successful extensions: 1158
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1153
Number of HSP's successfully gapped: 1
Length of query: 873
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 763
Effective length of database: 11,292,261
Effective search space: 8615995143
Effective search space used: 8615995143
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)