FiT-DB / Search/ Help/ Sample detail

Os01g0549500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phox-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.52 (0.0149) R2 : 0.048
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.151 (0.0315) R2dN8 : 0.062 R2N8 : 0.048
σ : 0.282
deviance : 36.37
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
15.17 0.183 9.51 0.562 0.392 0.369 -0.0994 0.397 0.147 5.71 20.8 1929 -- --
15.48 0.183 9.52 0.517 0.392 0.296 -0.0708 -- 0.133 5.57 21.5 2006 -- --
15.15 0.181 9.51 0.563 0.392 0.367 -- 0.402 0.144 5.72 21 1972 -- --
15.46 0.183 9.52 0.478 0.389 0.312 -- -- 0.124 5.78 21.27 2023 -- --
22.54 0.221 9.51 0.585 -- 0.363 -- 0.456 0.151 -- 21.33 2670 -- --
18.02 0.199 9.5 0.627 0.382 -- -0.169 -- 0.212 5.59 -- -- -- --
18.09 0.199 9.5 0.626 0.381 -- -- -- 0.213 5.6 -- -- -- --
22.87 0.223 9.53 0.506 -- 0.315 -- -- 0.136 -- 21.24 1336 -- --
19.2 0.204 9.54 -- 0.398 0.574 -- -- 0.0313 5.71 19.3 7891 -- --
25.63 0.237 9.51 0.638 -- -- -- -- 0.222 -- -- -- -- --
28.41 0.249 9.52 -- 0.391 -- -- -- 0.143 5.53 -- -- -- --
25.96 0.237 9.55 -- -- 0.517 -- -- 0.0302 -- 18.29 47520 -- --
36.37 0.282 9.52 -- -- -- -- -- 0.151 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 15.09 wind 3.0 43200 < th dose dependent rect. 5 1
2 15.12 wind 9.0 14400 < th dose independent rect. 10 1
4 15.15 humidity 70.0 1440 > th dose dependent rect. 11 1
6 15.25 wind 9.0 14400 > th dose independent rect. 10 1
7 15.25 wind 5.0 43200 < th dose dependent rect. 1 1
9 15.28 wind 3.0 43200 < th dose dependent rect. 22 8
10 15.31 precipitation 0.1 14400 > th dose independent rect. 17 1
13 15.34 precipitation 0.1 14400 > th dose dependent rect. 17 1
22 15.39 temperature 20.0 1440 > th dose independent rect. 3 19
23 15.40 humidity 80.0 4320 < th dose independent rect. 22 13
32 15.42 wind 1.0 43200 > th dose dependent rect. 1 1
33 15.42 temperature 10.0 1440 > th dose dependent rect. 24 1
34 15.43 humidity 80.0 1440 < th dose independent rect. 10 2
35 15.43 wind 1.0 43200 > th dose independent rect. 21 9
36 15.43 temperature 20.0 1440 < th dose independent rect. 3 19
39 15.44 wind 1.0 43200 > th dose independent rect. 5 2
50 15.45 temperature 30.0 1440 < th dose dependent rect. 24 2
53 15.45 humidity 80.0 4320 < th dose dependent rect. 21 12
54 15.46 precipitation 0.1 14400 < th dose independent rect. 17 1
62 15.46 precipitation 0.1 14400 < th dose dependent rect. 17 1
65 15.47 humidity 80.0 1440 > th dose independent rect. 10 2
66 15.47 wind 1.0 43200 > th dose independent rect. 4 4
73 15.48 humidity 80.0 1440 < th dose independent rect. 1 11
82 15.48 humidity 80.0 4320 < th dose dependent rect. 22 10
83 15.49 wind 1.0 43200 < th dose independent rect. 22 8
85 15.49 wind 1.0 43200 < th dose independent rect. 20 10
87 15.49 humidity 80.0 1440 > th dose independent rect. 22 14
104 15.50 humidity 80.0 1440 > th dose independent rect. 1 11
110 15.50 humidity 90.0 4320 > th dose dependent rect. 8 2
115 15.50 temperature 25.0 1440 < th dose dependent rect. 10 18
118 15.51 temperature 25.0 1440 < th dose independent rect. 1 2
152 15.53 temperature 20.0 4320 > th dose independent rect. 20 3
155 15.53 temperature 20.0 4320 > th dose independent rect. 13 10
157 15.53 temperature 20.0 1440 > th dose independent rect. 8 22
170 15.54 temperature 20.0 4320 > th dose independent rect. 18 5
181 15.54 temperature 20.0 1440 > th dose independent rect. 18 22
196 15.54 temperature 25.0 1440 < th dose dependent rect. 13 15
203 15.55 temperature 20.0 1440 > th dose independent no NA NA
205 15.55 temperature 25.0 1440 < th dose independent rect. 1 4
206 15.55 temperature 25.0 1440 < th dose independent rect. 23 6
207 15.55 temperature 20.0 4320 > th dose independent rect. 16 7
220 15.55 temperature 20.0 1440 > th dose independent rect. 13 23
233 15.56 temperature 20.0 4320 < th dose independent rect. 20 3
236 15.56 temperature 20.0 4320 < th dose independent rect. 18 5
242 15.56 temperature 20.0 4320 < th dose independent rect. 13 10
246 15.56 temperature 20.0 1440 > th dose independent rect. 13 18
253 15.56 temperature 20.0 1440 < th dose independent rect. 9 21
284 15.57 temperature 20.0 1440 > th dose independent sin 0 NA
285 15.57 precipitation 0.1 14400 > th dose independent rect. 14 2
293 15.57 precipitation 0.1 4320 > th dose independent rect. 1 16
294 15.57 precipitation 0.1 4320 < th dose independent rect. 1 16
315 15.57 temperature 20.0 1440 < th dose independent rect. 18 23
316 15.57 temperature 25.0 1440 < th dose dependent sin 16 NA
317 15.57 precipitation 0.1 14400 > th dose dependent rect. 14 2
325 15.57 precipitation 0.1 4320 < th dose dependent rect. 1 16
342 15.58 temperature 20.0 1440 > th dose independent rect. 18 18
358 15.58 temperature 20.0 1440 < th dose independent rect. 18 21
364 15.58 temperature 20.0 1440 < th dose independent rect. 13 23
373 15.58 humidity 80.0 4320 < th dose dependent rect. 1 7
383 15.59 temperature 20.0 1440 < th dose independent no NA NA
395 15.59 temperature 20.0 1440 < th dose independent rect. 13 18
485 15.60 precipitation 0.1 4320 > th dose dependent rect. 1 16
493 15.61 precipitation 0.1 14400 < th dose independent rect. 14 2
510 15.61 temperature 20.0 1440 < th dose independent rect. 18 18
535 15.61 precipitation 0.1 14400 < th dose dependent rect. 14 2
549 15.62 temperature 20.0 1440 > th dose independent rect. 3 13
550 15.62 temperature 20.0 1440 > th dose independent rect. 18 13
583 15.63 temperature 20.0 1440 < th dose independent sin 0 NA
600 15.63 temperature 20.0 1440 < th dose independent rect. 3 13
637 15.63 temperature 25.0 1440 < th dose dependent rect. 20 9
649 15.64 precipitation 0.1 4320 < th dose independent rect. 3 5
684 15.64 precipitation 0.1 4320 < th dose dependent rect. 3 5
686 15.64 temperature 25.0 1440 < th dose dependent rect. 20 7
693 15.64 humidity 70.0 1440 > th dose dependent rect. 2 10
706 15.65 precipitation 0.1 4320 < th dose independent rect. 4 1
741 15.65 precipitation 0.1 4320 < th dose dependent rect. 4 1
748 15.65 precipitation 0.1 4320 > th dose dependent rect. 3 5
769 15.66 precipitation 0.1 4320 > th dose independent rect. 4 1
777 15.66 temperature 20.0 1440 > th dose independent rect. 3 9
814 15.66 precipitation 0.1 4320 > th dose dependent rect. 1 7
829 15.67 temperature 20.0 1440 > th dose independent sin 12 NA
835 15.67 precipitation 0.1 4320 > th dose independent rect. 3 5
917 15.68 precipitation 0.1 4320 > th dose dependent rect. 4 1
974 15.69 temperature 25.0 1440 < th dose dependent rect. 21 1
997 15.69 temperature 25.0 1440 < th dose dependent rect. 24 22