BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0549500 Os01g0549500|AK070641
         (678 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48195.1  | chr3:17828706-17832388 REVERSE LENGTH=939          535   e-152

>AT3G48195.1 | chr3:17828706-17832388 REVERSE LENGTH=939
          Length = 938

 Score =  535 bits (1379), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 267/498 (53%), Positives = 343/498 (68%), Gaps = 20/498 (4%)

Query: 111 DNLDDNHLFDDMVQEMEHILLNSGEPHESASFTDYRANNSSQAHHFRXXXXXXXXXXXXX 170
           +N + N  +DD V +ME ILL+SGE    +S   +  N+                     
Sbjct: 403 ENTELNDFYDDFVHDMEEILLDSGE----SSGVRFSKNDKMFQLQLSLPNRDGGQTATTS 458

Query: 171 XY--VYPLPHHPSKIDWVEVVGAKQRTGDVSFGERMVGVREYTVYLLKVKSGEDDWEIER 228
                 P      +ID VEVVG KQ+ GDVS  ER+VGV+EYTVY+++V SG+D WEIER
Sbjct: 459 GLDDSSPTVSQRFRIDRVEVVGVKQKKGDVSLSERLVGVKEYTVYVIRVWSGKDKWEIER 518

Query: 229 RYREFYALYQQLKLLFAEKGFSLPPAWRNVEKESSKLFGNASPDIVNERSSLIQDCLCSL 288
           RYR+FY+LY++L  LFA++G++LP  W +VE+ES K+FG  SP+ V ER+ LIQDCL S+
Sbjct: 519 RYRDFYSLYRRLTSLFADQGWTLPTPWTSVERESRKIFG-TSPNAVAERTVLIQDCLNSV 577

Query: 289 LVSSYPFGTPTPLVSFLSPGSPAYEYSLLKTLIPRSLQRLSSDSHSKGSSCNGTSHKDSA 348
           L S +    P  L+ FLSP       S L +++            S   S    +   S+
Sbjct: 578 LQSRFFPTLPNALLRFLSPQDAYANSSGLDSIV------------SPTGSAAIDAATTSS 625

Query: 349 SMGKTISLVVEDRPRKSTRQLLELQHYNCAGCHRHLDAGRTMLQEIVQTIGWNKPRFCAY 408
           S G TIS +V+ RP KS +QLLE QHY CAGCHR+ D G T++++ V+ +GW KPR C Y
Sbjct: 626 SYGNTISFIVDIRPHKSVKQLLEAQHYICAGCHRYFDDGATLVRDFVKALGWGKPRLCEY 685

Query: 409 TGQLFCASCHTNDTAVLPAKVLHHWDFSLYPISQLAKAYLDSIYDQPMLCVSAVNPFLFA 468
           TG LFC+SCHTND AVLPA VLHHWDF+ YP+SQLAK+YLDSI++QPMLCVSAVNPFL +
Sbjct: 686 TGHLFCSSCHTNDMAVLPATVLHHWDFNRYPVSQLAKSYLDSIHEQPMLCVSAVNPFLSS 745

Query: 469 KVPALLNIMSIRKKIAAMLPCVQCPFRNSIFRGLGARRYLLDGNDFFALRDLVDLSKGAF 528
           KVPAL +IMSIRK+I  MLP V+CPF+ ++++GL +RRYLL+ ++FFALRDL+DLSKG F
Sbjct: 746 KVPALNHIMSIRKRITIMLPYVRCPFQKTLYKGLSSRRYLLESSEFFALRDLIDLSKGPF 805

Query: 529 AALPVKVQTISNRILLHITEQCLVCYDSGVPCAARQACDDPLALIFPFQE-DEATKCGSC 587
           AALP  V+T+  +IL HITEQCLVC D GVPC ARQACDD  +LIFPFQE DE +KC  C
Sbjct: 806 AALPAIVETVRRKILEHITEQCLVCCDVGVPCNARQACDDTSSLIFPFQEKDEVSKCRLC 865

Query: 588 GSIFHKQCFRKISICPCG 605
           GS+FHK+C  ++S C CG
Sbjct: 866 GSVFHKKCLSRLSNCHCG 883



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.136    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,559,866
Number of extensions: 548733
Number of successful extensions: 1402
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1399
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 573
Effective length of database: 8,227,889
Effective search space: 4714580397
Effective search space used: 4714580397
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)