BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0549500 Os01g0549500|AK070641
         (678 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0549500  Phox-like domain containing protein                1195   0.0  

>Os01g0549500 Phox-like domain containing protein
          Length = 678

 Score = 1195 bits (3092), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 598/678 (88%), Positives = 598/678 (88%)

Query: 1   MEPARRSTXXXXXXXXXXXXXXXXXXXRYXXXXXXXXXXXXXXXXXXXXDLWDHQMDLLL 60
           MEPARRST                   RY                    DLWDHQMDLLL
Sbjct: 1   MEPARRSTAASDGGGGSSAAGSDGEDDRYLSASSALGTPSSLATLLPSSDLWDHQMDLLL 60

Query: 61  LDDPVAGFPKAHQLTRLHXXXXXXXXXXXXXXXXGDAVLPRPPEPDPTQVDNLDDNHLFD 120
           LDDPVAGFPKAHQLTRLH                GDAVLPRPPEPDPTQVDNLDDNHLFD
Sbjct: 61  LDDPVAGFPKAHQLTRLHPPPEPPRPDPPAPAAAGDAVLPRPPEPDPTQVDNLDDNHLFD 120

Query: 121 DMVQEMEHILLNSGEPHESASFTDYRANNSSQAHHFRXXXXXXXXXXXXXXYVYPLPHHP 180
           DMVQEMEHILLNSGEPHESASFTDYRANNSSQAHHFR              YVYPLPHHP
Sbjct: 121 DMVQEMEHILLNSGEPHESASFTDYRANNSSQAHHFRDGSTTASTSGTDDAYVYPLPHHP 180

Query: 181 SKIDWVEVVGAKQRTGDVSFGERMVGVREYTVYLLKVKSGEDDWEIERRYREFYALYQQL 240
           SKIDWVEVVGAKQRTGDVSFGERMVGVREYTVYLLKVKSGEDDWEIERRYREFYALYQQL
Sbjct: 181 SKIDWVEVVGAKQRTGDVSFGERMVGVREYTVYLLKVKSGEDDWEIERRYREFYALYQQL 240

Query: 241 KLLFAEKGFSLPPAWRNVEKESSKLFGNASPDIVNERSSLIQDCLCSLLVSSYPFGTPTP 300
           KLLFAEKGFSLPPAWRNVEKESSKLFGNASPDIVNERSSLIQDCLCSLLVSSYPFGTPTP
Sbjct: 241 KLLFAEKGFSLPPAWRNVEKESSKLFGNASPDIVNERSSLIQDCLCSLLVSSYPFGTPTP 300

Query: 301 LVSFLSPGSPAYEYSLLKTLIPRSLQRLSSDSHSKGSSCNGTSHKDSASMGKTISLVVED 360
           LVSFLSPGSPAYEYSLLKTLIPRSLQRLSSDSHSKGSSCNGTSHKDSASMGKTISLVVED
Sbjct: 301 LVSFLSPGSPAYEYSLLKTLIPRSLQRLSSDSHSKGSSCNGTSHKDSASMGKTISLVVED 360

Query: 361 RPRKSTRQLLELQHYNCAGCHRHLDAGRTMLQEIVQTIGWNKPRFCAYTGQLFCASCHTN 420
           RPRKSTRQLLELQHYNCAGCHRHLDAGRTMLQEIVQTIGWNKPRFCAYTGQLFCASCHTN
Sbjct: 361 RPRKSTRQLLELQHYNCAGCHRHLDAGRTMLQEIVQTIGWNKPRFCAYTGQLFCASCHTN 420

Query: 421 DTAVLPAKVLHHWDFSLYPISQLAKAYLDSIYDQPMLCVSAVNPFLFAKVPALLNIMSIR 480
           DTAVLPAKVLHHWDFSLYPISQLAKAYLDSIYDQPMLCVSAVNPFLFAKVPALLNIMSIR
Sbjct: 421 DTAVLPAKVLHHWDFSLYPISQLAKAYLDSIYDQPMLCVSAVNPFLFAKVPALLNIMSIR 480

Query: 481 KKIAAMLPCVQCPFRNSIFRGLGARRYLLDGNDFFALRDLVDLSKGAFAALPVKVQTISN 540
           KKIAAMLPCVQCPFRNSIFRGLGARRYLLDGNDFFALRDLVDLSKGAFAALPVKVQTISN
Sbjct: 481 KKIAAMLPCVQCPFRNSIFRGLGARRYLLDGNDFFALRDLVDLSKGAFAALPVKVQTISN 540

Query: 541 RILLHITEQCLVCYDSGVPCAARQACDDPLALIFPFQEDEATKCGSCGSIFHKQCFRKIS 600
           RILLHITEQCLVCYDSGVPCAARQACDDPLALIFPFQEDEATKCGSCGSIFHKQCFRKIS
Sbjct: 541 RILLHITEQCLVCYDSGVPCAARQACDDPLALIFPFQEDEATKCGSCGSIFHKQCFRKIS 600

Query: 601 ICPCGKGAASKGRKIVALEQAVRDDASRPSTQLIQPXXXXXXXXXXXDIISKARPDKLWK 660
           ICPCGKGAASKGRKIVALEQAVRDDASRPSTQLIQP           DIISKARPDKLWK
Sbjct: 601 ICPCGKGAASKGRKIVALEQAVRDDASRPSTQLIQPSSFSSSSGFFSDIISKARPDKLWK 660

Query: 661 PRNSSPVILMGSLPDTST 678
           PRNSSPVILMGSLPDTST
Sbjct: 661 PRNSSPVILMGSLPDTST 678



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.136    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,518,055
Number of extensions: 866859
Number of successful extensions: 1997
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1995
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 570
Effective length of database: 11,396,689
Effective search space: 6496112730
Effective search space used: 6496112730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)