Os01g0527700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protoheme IX farnesyltransferase family protein.
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Os01g0527700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protoheme IX farnesyltransferase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.22 | 0.279 | 9.51 | 0.0822 | 0.423 | 1.03 | 0.0553 | 2.8 | -0.0157 | 5.17 | 11.32 | 234 | -- | -- |
| 36.82 | 0.283 | 9.56 | -0.244 | 0.519 | 0.985 | -0.343 | -- | -0.0737 | 4.63 | 24.2 | 133 | -- | -- |
| 35.23 | 0.276 | 9.51 | 0.0758 | 0.422 | 1.02 | -- | 2.75 | -0.0175 | 5.18 | 11.15 | 233 | -- | -- |
| 37.18 | 0.284 | 9.55 | -0.275 | 0.521 | 0.997 | -- | -- | -0.0856 | 4.55 | 24.2 | 122 | -- | -- |
| 41.27 | 0.301 | 9.51 | 0.154 | -- | 0.434 | -- | 2.23 | 0.0446 | -- | 21.5 | 93 | -- | -- |
| 51.34 | 0.336 | 9.54 | -0.108 | 0.108 | -- | -0.832 | -- | 0.0183 | 5.22 | -- | -- | -- | -- |
| 52.85 | 0.34 | 9.53 | -0.107 | 0.121 | -- | -- | -- | 0.0226 | 7.2 | -- | -- | -- | -- |
| 44.53 | 0.311 | 9.54 | -0.191 | -- | 0.661 | -- | -- | 0.00738 | -- | 26.3 | 3 | -- | -- |
| 39.11 | 0.291 | 9.55 | -- | 0.48 | 0.91 | -- | -- | -0.0508 | 4.63 | 24.23 | 119 | -- | -- |
| 53.63 | 0.342 | 9.54 | -0.105 | -- | -- | -- | -- | 0.0247 | -- | -- | -- | -- | -- |
| 53.15 | 0.341 | 9.53 | -- | 0.12 | -- | -- | -- | 0.0345 | 7.25 | -- | -- | -- | -- |
| 45.41 | 0.314 | 9.53 | -- | -- | 0.637 | -- | -- | 0.0321 | -- | 26.4 | 4 | -- | -- |
| 53.92 | 0.343 | 9.53 | -- | -- | -- | -- | -- | 0.0363 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.54 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 2 | 33.58 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 3 | 33.70 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 9 | 33.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 9 |
| 21 | 34.13 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 22 |
| 71 | 34.58 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 118 | 34.93 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 193 | 35.31 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 249 | 35.55 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 6 |
| 253 | 35.56 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 14 |
| 268 | 35.60 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 12 |
| 272 | 35.61 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 293 | 35.71 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 296 | 35.72 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 385 | 35.88 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 410 | 35.94 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 437 | 36.00 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 450 | 36.03 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 470 | 36.09 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 472 | 36.09 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 536 | 36.25 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 620 | 36.34 | temperature | 30 | 4320 | > th | dose independent | sin | 8 | NA |
| 624 | 36.35 | temperature | 30 | 4320 | < th | dose independent | sin | 8 | NA |
| 672 | 36.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 705 | 36.43 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 916 | 36.61 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 923 | 36.63 | temperature | 25 | 4320 | > th | dose dependent | sin | 9 | NA |
| 944 | 36.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 959 | 36.67 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 1 |