BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0527700 Os01g0527700|AK061861
         (435 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0527700  Protoheme IX farnesyltransferase family protein     694   0.0  

>Os01g0527700 Protoheme IX farnesyltransferase family protein
          Length = 435

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/416 (83%), Positives = 348/416 (83%)

Query: 20  IPDTSHHPATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAL 79
           IPDTSHHPAT                                               DAL
Sbjct: 20  IPDTSHHPATALAPIASPRSSSSSSSSSAPTIAAAVPAVAEATAAAAAVSRQAGSVSDAL 79

Query: 80  RHYGRCYFELSKARLSALVVATSGAGYVLGSGNMVDIAGLCCTCAGTMMVAASANTLNQV 139
           RHYGRCYFELSKARLSALVVATSGAGYVLGSGNMVDIAGLCCTCAGTMMVAASANTLNQV
Sbjct: 80  RHYGRCYFELSKARLSALVVATSGAGYVLGSGNMVDIAGLCCTCAGTMMVAASANTLNQV 139

Query: 140 FEIKNDAKMKRTMRRPLPSGRISPAHAAMWATSVGVAGTXXXXXXXXXXXXXXXXXXXXX 199
           FEIKNDAKMKRTMRRPLPSGRISPAHAAMWATSVGVAGT                     
Sbjct: 140 FEIKNDAKMKRTMRRPLPSGRISPAHAAMWATSVGVAGTALLAWKANGLAAGLAASNLIL 199

Query: 200 YAFVYTPLKQIHPVNTWVGAVVGAIPPLLGWAAASSELSLNAMILPAALYYWQIPHFMAL 259
           YAFVYTPLKQIHPVNTWVGAVVGAIPPLLGWAAASSELSLNAMILPAALYYWQIPHFMAL
Sbjct: 200 YAFVYTPLKQIHPVNTWVGAVVGAIPPLLGWAAASSELSLNAMILPAALYYWQIPHFMAL 259

Query: 260 AYLCRNDYLAGGYRMFSFADPTGKRTAWVSLRNCLYMLPLGFFAYNWGLTSEWFSLEASL 319
           AYLCRNDYLAGGYRMFSFADPTGKRTAWVSLRNCLYMLPLGFFAYNWGLTSEWFSLEASL
Sbjct: 260 AYLCRNDYLAGGYRMFSFADPTGKRTAWVSLRNCLYMLPLGFFAYNWGLTSEWFSLEASL 319

Query: 320 LTLGLTIGALSFVLEPTPKTARRMFYGSLLYLPAFMAGLLLHRLPNEQKEHNVTQTSEIT 379
           LTLGLTIGALSFVLEPTPKTARRMFYGSLLYLPAFMAGLLLHRLPNEQKEHNVTQTSEIT
Sbjct: 320 LTLGLTIGALSFVLEPTPKTARRMFYGSLLYLPAFMAGLLLHRLPNEQKEHNVTQTSEIT 379

Query: 380 GILYGAEQQDEERARQKREDRKPSRIHSRPPVAYASVAPFPFLPVPIYVSTQGHEL 435
           GILYGAEQQDEERARQKREDRKPSRIHSRPPVAYASVAPFPFLPVPIYVSTQGHEL
Sbjct: 380 GILYGAEQQDEERARQKREDRKPSRIHSRPPVAYASVAPFPFLPVPIYVSTQGHEL 435



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.135    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,519,642
Number of extensions: 489138
Number of successful extensions: 1347
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1346
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 331
Effective length of database: 11,605,545
Effective search space: 3841435395
Effective search space used: 3841435395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)