BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0527700 Os01g0527700|AK061861
         (435 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44520.1  | chr2:18379660-18381731 FORWARD LENGTH=432          429   e-120

>AT2G44520.1 | chr2:18379660-18381731 FORWARD LENGTH=432
          Length = 431

 Score =  429 bits (1103), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/350 (60%), Positives = 253/350 (72%), Gaps = 13/350 (3%)

Query: 81  HYGRCYFELSKARLSALVVATSGAGYVLGSGNM-VDIAGLCCTCAGTMMVAASANTLNQV 139
           HY RCY+ELSKA+LS LVVATSG GY+LG+GN  +   GLC TCAGTMM+AASAN+LNQ+
Sbjct: 93  HYARCYWELSKAKLSMLVVATSGTGYILGTGNAAISFPGLCYTCAGTMMIAASANSLNQI 152

Query: 140 FEIKNDAKMKRTMRRPLPSGRISPAHAAMWATSVGVAGTXXXXXXXXXXXXXXXXXXXXX 199
           FEI ND+KMKRTM RPLPSGRIS  HA  WAT  G +G                      
Sbjct: 153 FEISNDSKMKRTMLRPLPSGRISVPHAVAWATIAGASGACLLASKTNMLAAGLASANLVL 212

Query: 200 YAFVYTPLKQIHPVNTWVGAVVGAIPPLLGWAAASSELSLNAMILPAALYYWQIPHFMAL 259
           YAFVYTPLKQ+HP+NTWVGAVVGAIPPLLGWAAAS ++S N+MILPAALY+WQIPHFMAL
Sbjct: 213 YAFVYTPLKQLHPINTWVGAVVGAIPPLLGWAAASGQISYNSMILPAALYFWQIPHFMAL 272

Query: 260 AYLCRNDYLAGGYRMFSFADPTGKRTAWVSLRNCLYMLPLGFFAYNWGLTSEWFSLEASL 319
           A+LCRNDY AGGY+M S  DP+GKR A V+LRNC YM+PLGF AY+WGLTS WF LE++L
Sbjct: 273 AHLCRNDYAAGGYKMLSLFDPSGKRIAAVALRNCFYMIPLGFIAYDWGLTSSWFCLESTL 332

Query: 320 LTLGLTIGALSFVLEPTPKTARRMFYGSLLYLPAFMAGLLLHRLPNEQKEHNVTQTSEIT 379
           LTL +   A SF  + T   AR+MF+ SLL+LP FM+GLLLHR+ N+ ++    Q  E  
Sbjct: 333 LTLAIAATAFSFYRDRTMHKARKMFHASLLFLPVFMSGLLLHRVSNDNQQ----QLVEEA 388

Query: 380 GILYGAEQQDEERARQKREDRKPSRIHSRPPVAYASVAPFPFLPVPIYVS 429
           G+      + + + R+KR         ++PPVAYAS APFPFLP P + S
Sbjct: 389 GLTNSVSGEVKTQRRKKRV--------AQPPVAYASAAPFPFLPAPSFYS 430



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.135    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,521,604
Number of extensions: 282198
Number of successful extensions: 850
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 847
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 334
Effective length of database: 8,337,553
Effective search space: 2784742702
Effective search space used: 2784742702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 113 (48.1 bits)