Os01g0526200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TRAUB family protein.
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Os01g0526200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TRAUB family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.19 | 0.279 | 10.2 | -0.613 | 0.065 | 1.53 | 0.452 | 1.59 | -0.11 | 22.2 | 15.3 | 10 | -- | -- |
| 36.58 | 0.282 | 10.2 | -0.803 | 0.0763 | 1.33 | 0.175 | -- | -0.161 | 21.3 | 18.8 | 12 | -- | -- |
| 35.85 | 0.281 | 10.2 | -0.679 | 0.0713 | 1.53 | -- | 1.22 | -0.123 | 21.4 | 15.3 | 10 | -- | -- |
| 36.74 | 0.282 | 10.2 | -0.833 | 0.0654 | 1.33 | -- | -- | -0.171 | 21.3 | 18.59 | 12 | -- | -- |
| 36.08 | 0.28 | 10.2 | -0.677 | -- | 1.44 | -- | 1.13 | -0.121 | -- | 16.17 | 10 | -- | -- |
| 61.2 | 0.367 | 10.2 | -0.552 | 0.448 | -- | 0.456 | -- | 0.0534 | 15.1 | -- | -- | -- | -- |
| 61.87 | 0.368 | 10.2 | -0.542 | 0.449 | -- | -- | -- | 0.0559 | 14.9 | -- | -- | -- | -- |
| 36.97 | 0.283 | 10.2 | -0.824 | -- | 1.3 | -- | -- | -0.166 | -- | 18.8 | 12 | -- | -- |
| 53.32 | 0.34 | 10.2 | -- | 0.109 | 1.03 | -- | -- | -0.0339 | 17.7 | 19.5 | 4 | -- | -- |
| 73.47 | 0.401 | 10.2 | -0.561 | -- | -- | -- | -- | 0.0444 | -- | -- | -- | -- | -- |
| 69.61 | 0.39 | 10.2 | -- | 0.459 | -- | -- | -- | 0.116 | 14.9 | -- | -- | -- | -- |
| 53.81 | 0.342 | 10.2 | -- | -- | 1.09 | -- | -- | -0.0459 | -- | 19.51 | 2 | -- | -- |
| 81.78 | 0.422 | 10.2 | -- | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.20 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 3 | 35.47 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 12 | 36.18 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 13 | 36.21 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 14 | 36.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 15 | 36.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 20 | 36.33 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 21 | 36.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 22 | 36.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 24 | 36.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 34 | 36.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 35 | 36.76 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 40 | 36.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 42 | 36.94 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 47 | 37.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 52 | 37.20 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 54 | 37.30 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 56 | 37.31 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 61 | 37.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 65 | 37.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 67 | 37.45 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 97 | 37.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 101 | 37.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 121 | 38.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 124 | 38.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 9 |
| 125 | 38.08 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 151 | 38.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 165 | 38.29 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 174 | 38.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 303 | 38.96 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 310 | 38.99 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 342 | 39.09 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 20 |
| 346 | 39.11 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 421 | 39.26 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 430 | 39.26 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 537 | 39.46 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 567 | 39.52 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 569 | 39.52 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 19 |
| 611 | 39.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 675 | 39.68 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 20 |
| 796 | 39.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 802 | 39.87 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |