BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0526200 Os01g0526200|AK063442
         (419 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G61330.1  | chr5:24657287-24660103 REVERSE LENGTH=437          342   2e-94

>AT5G61330.1 | chr5:24657287-24660103 REVERSE LENGTH=437
          Length = 436

 Score =  342 bits (878), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 168/302 (55%), Positives = 217/302 (71%), Gaps = 5/302 (1%)

Query: 115 TNQQNILETLKQHRDDDVSKGQAVKNQKVLWDKALEMRFLLQKAFSTSNKLPKEPIRSMF 174
           + +Q+IL+ LK+ + +D  KGQAVKNQK LWDK LE RFLLQKAF  SN+LP+EP++S+F
Sbjct: 126 SQEQDILKNLKRDKGEDAVKGQAVKNQKALWDKILEFRFLLQKAFDRSNRLPQEPVKSLF 185

Query: 175 CDHNQEIEQAYLDLLNSSKQTLGSMMELQEALLERNRATK---DVTDTDNSSELNGED-D 230
           C  ++++  AY DL+ SSK+TL S++ELQEAL E+N +     + T ++ S++ + ED D
Sbjct: 186 CSEDEDVSTAYTDLVTSSKKTLDSLLELQEALFEKNPSVDQQVNATASEESNKSDAEDSD 245

Query: 231 EWSEVQKLQKRITPFRNSEIDKWQRKTQVTTGAAALKGKLHAFNQNISDQVTSYMRDPSR 290
           EW  +  LQKR++ FRN  +DKWQRKTQVTTGAAA+KGKLHAFNQN+S+QV SYMRDPSR
Sbjct: 246 EWQRISDLQKRMSVFRNKAVDKWQRKTQVTTGAAAIKGKLHAFNQNVSEQVASYMRDPSR 305

Query: 291 MINRMHLRKSTLGVF-XXXXXXXXXXXXXXXXXXDPELVDDSEFYQQLLKEFLESCDAGA 349
           MI +M   +ST+ VF                   DPELV+D+EFY+QLLKEFLE+ D  +
Sbjct: 306 MIKQMQQSRSTVAVFGTVPQEAMEPNPEEKQEEGDPELVEDAEFYRQLLKEFLETIDPAS 365

Query: 350 SESAFYALKKQQHKKRKLVDRRASKSRKIRYHVHEKIANFXXXXXXXXXXXXXKLFENLF 409
           SE+AFY +KK Q KKRK+VDRRASKSRKIRY+VHEKI NF              L +NLF
Sbjct: 366 SEAAFYEMKKFQTKKRKVVDRRASKSRKIRYNVHEKIVNFMAPRPAKIPPNTADLLKNLF 425

Query: 410 GM 411
           G+
Sbjct: 426 GL 427



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.126    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,341,123
Number of extensions: 209143
Number of successful extensions: 635
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 633
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 318
Effective length of database: 8,337,553
Effective search space: 2651341854
Effective search space used: 2651341854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 113 (48.1 bits)