BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0526200 Os01g0526200|AK063442
         (419 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0526200  TRAUB family protein                                624   e-179

>Os01g0526200 TRAUB family protein
          Length = 419

 Score =  624 bits (1608), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 319/419 (76%), Positives = 319/419 (76%)

Query: 1   MAPGTTLAPKRRKAEAXXXXXXXXXXXXXXXXXXXXXLHDAEESFYSARSGSEDDRQVSS 60
           MAPGTTLAPKRRKAEA                     LHDAEESFYSARSGSEDDRQVSS
Sbjct: 1   MAPGTTLAPKRRKAEASPSPSPSPMGDSSDGGYSDSDLHDAEESFYSARSGSEDDRQVSS 60

Query: 61  SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRTLQTNQQNI 120
           S                                                YRTLQTNQQNI
Sbjct: 61  SNDDDDSEEEEQEEREMDEEEDEEDDDDEEMNEEDDEDEGEEMNELEKEYRTLQTNQQNI 120

Query: 121 LETLKQHRDDDVSKGQAVKNQKVLWDKALEMRFLLQKAFSTSNKLPKEPIRSMFCDHNQE 180
           LETLKQHRDDDVSKGQAVKNQKVLWDKALEMRFLLQKAFSTSNKLPKEPIRSMFCDHNQE
Sbjct: 121 LETLKQHRDDDVSKGQAVKNQKVLWDKALEMRFLLQKAFSTSNKLPKEPIRSMFCDHNQE 180

Query: 181 IEQAYLDLLNSSKQTLGSMMELQEALLERNRATKDVTDTDNSSELNGEDDEWSEVQKLQK 240
           IEQAYLDLLNSSKQTLGSMMELQEALLERNRATKDVTDTDNSSELNGEDDEWSEVQKLQK
Sbjct: 181 IEQAYLDLLNSSKQTLGSMMELQEALLERNRATKDVTDTDNSSELNGEDDEWSEVQKLQK 240

Query: 241 RITPFRNSEIDKWQRKTQVTTGAAALKGKLHAFNQNISDQVTSYMRDPSRMINRMHLRKS 300
           RITPFRNSEIDKWQRKTQVTTGAAALKGKLHAFNQNISDQVTSYMRDPSRMINRMHLRKS
Sbjct: 241 RITPFRNSEIDKWQRKTQVTTGAAALKGKLHAFNQNISDQVTSYMRDPSRMINRMHLRKS 300

Query: 301 TLGVFXXXXXXXXXXXXXXXXXXDPELVDDSEFYQQLLKEFLESCDAGASESAFYALKKQ 360
           TLGVF                  DPELVDDSEFYQQLLKEFLESCDAGASESAFYALKKQ
Sbjct: 301 TLGVFGEEVGEHENNKEENNTEGDPELVDDSEFYQQLLKEFLESCDAGASESAFYALKKQ 360

Query: 361 QHKKRKLVDRRASKSRKIRYHVHEKIANFXXXXXXXXXXXXXKLFENLFGMGNQKSTTA 419
           QHKKRKLVDRRASKSRKIRYHVHEKIANF             KLFENLFGMGNQKSTTA
Sbjct: 361 QHKKRKLVDRRASKSRKIRYHVHEKIANFMAPVPMVIPPMAPKLFENLFGMGNQKSTTA 419



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.126    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,459,222
Number of extensions: 292978
Number of successful extensions: 682
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 680
Number of HSP's successfully gapped: 2
Length of query: 419
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 316
Effective length of database: 11,657,759
Effective search space: 3683851844
Effective search space used: 3683851844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)