Os01g0512200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0512200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.91 | 0.235 | 10.3 | 0.906 | 0.786 | -0.646 | -0.115 | 0.326 | 0.211 | 23.3 | 78.43 | 1385 | -- | -- |
| 24.92 | 0.232 | 10.3 | 0.909 | 0.79 | -0.6 | -0.121 | -- | 0.204 | 23.3 | 78 | 1393 | -- | -- |
| 24.85 | 0.232 | 10.3 | 0.922 | 0.777 | -0.632 | -- | 0.343 | 0.216 | 23.2 | 78 | 1408 | -- | -- |
| 24.95 | 0.233 | 10.3 | 0.896 | 0.784 | -0.618 | -- | -- | 0.207 | 23.3 | 78 | 1395 | -- | -- |
| 48.03 | 0.325 | 10.3 | 0.913 | -- | -0.422 | -- | 0.0991 | 0.169 | -- | 78.06 | 1568 | -- | -- |
| 29.76 | 0.256 | 10.3 | 0.849 | 0.779 | -- | -0.159 | -- | 0.177 | 23.1 | -- | -- | -- | -- |
| 29.86 | 0.256 | 10.3 | 0.855 | 0.78 | -- | -- | -- | 0.177 | 23.1 | -- | -- | -- | -- |
| 48.09 | 0.324 | 10.3 | 0.911 | -- | -0.421 | -- | -- | 0.168 | -- | 78.06 | 1568 | -- | -- |
| 44.72 | 0.311 | 10.3 | -- | 0.762 | -0.588 | -- | -- | 0.126 | 23.1 | 81.02 | 1514 | -- | -- |
| 67.82 | 0.385 | 10.3 | 0.874 | -- | -- | -- | -- | 0.184 | -- | -- | -- | -- | -- |
| 49.15 | 0.328 | 10.3 | -- | 0.788 | -- | -- | -- | 0.0819 | 23.2 | -- | -- | -- | -- |
| 69.92 | 0.391 | 10.3 | -- | -- | -0.402 | -- | -- | 0.0679 | -- | 78.06 | 1568 | -- | -- |
| 87.96 | 0.438 | 10.3 | -- | -- | -- | -- | -- | 0.0867 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.88 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 2 | 23.89 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 7 | 24.22 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 18 |
| 10 | 24.28 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 8 |
| 22 | 24.35 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 8 |
| 31 | 24.40 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 18 |
| 45 | 24.44 | humidity | 80 | 1440 | < th | dose independent | sin | 0 | NA |
| 60 | 24.48 | humidity | 80 | 1440 | > th | dose independent | sin | 0 | NA |
| 113 | 24.58 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 222 | 24.94 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 9 |
| 282 | 25.11 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 20 |
| 301 | 25.14 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 325 | 25.18 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 328 | 25.18 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 356 | 25.21 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 21 |
| 360 | 25.21 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 361 | 25.21 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 364 | 25.22 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 19 |
| 389 | 25.24 | humidity | 70 | 1440 | > th | dose dependent | sin | 22 | NA |
| 397 | 25.26 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 406 | 25.26 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 421 | 25.27 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 434 | 25.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 487 | 25.35 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 494 | 25.36 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 496 | 25.36 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 554 | 25.42 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 560 | 25.42 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 16 |
| 567 | 25.43 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 601 | 25.47 | radiation | 1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 609 | 25.47 | humidity | 70 | 1440 | > th | dose dependent | rect. | 3 | 16 |
| 648 | 25.50 | temperature | 25 | 90 | > th | dose dependent | rect. | 16 | 23 |
| 668 | 25.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 14 |
| 675 | 25.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 22 |
| 776 | 25.60 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 12 |
| 791 | 25.61 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 828 | 25.63 | humidity | 90 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 840 | 25.64 | humidity | 70 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 885 | 25.69 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 11 |
| 926 | 25.73 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 927 | 25.73 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 6 |