BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0512200 Os01g0512200|AK099665
         (317 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48760.1  | chr1:18036652-18039261 REVERSE LENGTH=870           77   2e-14

>AT1G48760.1 | chr1:18036652-18039261 REVERSE LENGTH=870
          Length = 869

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 108/232 (46%), Gaps = 39/232 (16%)

Query: 1   LIGFVYSLREIQELKESKFDDDKHSRVKELVKNMQTVLSHEIGPVSLNAQEKVSLPDDLV 60
           ++G++  ++  QE+ E     D  +    +   M+ V S E GP+S  AQEKV +PD L 
Sbjct: 584 VLGYISVIK--QEIAEQLNLQDNETEASRVTAFMEDVFSEEFGPISATAQEKVCVPDGLE 641

Query: 61  LNENLAELVDIISE-------DDTTLSSSIVFYPRSCGSVETRDEPAXXXX------XXX 107
           L ENL +L +I  E       D  + +  I F   S   +  RD+               
Sbjct: 642 LKENLGDLEEICGEHLKPVESDSVSYTDKISF---SVSKLRIRDQQEATSSSSPPHEASS 698

Query: 108 XXXEHRKRHGLYYLPTGKAED-----GPVDYPHANDPLLPASSESALDDKLKTIQPVTGG 162
              EHRKRHG+YYL T + ED        DYP AN+ L    S+ + + K          
Sbjct: 699 LLAEHRKRHGMYYL-TSQKEDQDSNGTSSDYPLANE-LANEISQDSFNPK---------- 746

Query: 163 KKPKAVKSRPKVVKL-DGEDFLSSMVASASVPK---EDSLSGAVRGVLLGRD 210
           +KP   K RP VVKL DG++   +  A  ++     ++SLS A++  LL ++
Sbjct: 747 RKPNQSKPRPVVVKLDDGDESRITPQAKTNIQTANDDESLSRAIQSALLVKN 798



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.129    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,105,478
Number of extensions: 299797
Number of successful extensions: 1019
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1017
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,392,385
Effective search space: 1829539930
Effective search space used: 1829539930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 112 (47.8 bits)